| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is loN-1
Identifier: 197117085
GI number: 197117085
Start: 815350
End: 817734
Strand: Reverse
Name: loN-1
Synonym: Gbem_0689
Alternate gene names: 197117085
Gene position: 817734-815350 (Counterclockwise)
Preceding gene: 197117086
Following gene: 197117083
Centisome position: 17.72
GC content: 60.88
Gene sequence:
>2385_bases ATGACAGAGAACATCACCATAAATATGCCGGAGATCGTCCCGCTTTATCCCTTGCGGGAAATCATTGCTTTTCCGTACAT GGTCTTCACCATTTTCCTCAAACAGGAGGACATGCCTCCATTCGAGGAAGCGGTGCTGTTCAACAACCTGGTGGCACTGG TCAAACTCCGGGAAGAGCCGACCGGAGAGTTGTTTCCGGCACTGCATGAAATCGGCACACTGTGCAAGGTGATGCAGATC AACAAACTGGCCGGCGGCGGAGCCAAGGTCGTCCTTGAAGGGGTGATCAGAGTCAGGTTGCTGGCCATCGTGCAGCAGAC GCCGGTGGCGCTCTCCAGGCTGGAACCGGTGCGCGAGTTCGCCGAAAAGTCCATGGTGTCCGAGGCGCTGGTAGGAAGCC TCAACGCCCTCCTCAAGATCGCCCTCTCCTACGGCCGCCCCCTCCCTGACGACGTCATGAAGATGATCGACTTTATCGAC AACCCGGCGCGCCTTTCCGACCTGGTAGCACTCTACCTGAACCTCCCCATCGATGAACTGCAGAAGCTCCTTGAAACCGT CGACCCCCTGGAGCGGCTGAAAAAGGTCTACATGCACCTGACCAACGAGGTCCAGCGCCTGCAGATCAAGGGTGAGGTGC AGGCTGAGGTAACCAAGAAGGTCGGGAAGAGCCAGAAAGAGTTCCTGCTGCGCGAGCAGATGAAGCAGATCCAGGAGGAA CTGGGGGAGGAAGACTCCAGGCTGGGCGAGGCGAACGAACTGAGGTCCAAAGTCGAAAGCGCCCATATGCCCGAAGACGT GCGCAGGATCGCCGAAAAGGAGATGCGCAGGCTGGAGCGGATCAACCCAGCCTCCCCCGAGTACACCGTCTCCCGCACCT ACCTCGACTACCTGACCACCATCCCCTGGCAGGTCAGCACCCCGGACAACCGTGACATCAACCAGGCCGAGACCATCCTC AACGAGGACCACTACGACCTGAAGAAGGTGAAGGAACGCATCCTGGAATACCTGGCGGTGCGGTCGCTCAAGGACAAGAT GAAGGGTCCGATCCTCTGCTTCGTGGGGCCTCCAGGCGTAGGCAAGACCAGCCTCGGGAAATCCATAGCACGTACCCTCG GGCGCAAGTTCATCAGGATCTCTTTGGGCGGCATGCGCGACGAGGCCGAGATCAGGGGGCACCGGCGCACCTACATCGGC GCACTTCCCGGGCGCATCATCCAGGAGATCAACCGGGCCGGCTCCAACAACCCCGTCTTCATGCTGGACGAAGTAGACAA GATCGGCGCGGATTTCCGGGGCGACCCGGCCAGCGCGCTCCTCGAAGTGCTAGACCCCGAGCAGAACTTCTCCTTCACGG ACCACTATTTGGACGTCCCGTTCGACCTCACCAACGTGATGTTCATCACCACGGCAAACCAGCTCGACCCCATCCCGGCG CCACTCAAGGACAGGATGGAAGTGATCACCCTCTCCGGGTACACCGACGAGGAGAAGCTGAATATCGCCAAGAGCTATCT GGTCGCACGCGAGGTCGAGGAGAACGGGCTCGCCAGCATGGCGCCCCAGTTCACCGACGAGGCCATCTACCGGGTCACCC ACGACTACACCCGCGAGGCCGGCGTCAGGAACCTGCAACGCAACATCGCCTCCATCTGCCGCAAGATCGCCAAGGAAGTG GCCCAAGGGAAGAAGGCGCGCCCCATTGTCAATCCCGAAACCGTCTCCGAGCTCTTAGGGGCGCCGAAGTTCTTCGACGA GGTCGCCTCGGAAAAGGACCGGGTCGGCGTAGCGACGGGGCTTGCCTGGACCGAAAGCGGTGGGGACATCATCTTCGTGG AAGCGACCAAGATGAAGGGAAAAGAGGACCTGATCCTCACCGGCTCGCTGGGCGAGGTGATGAAGGAATCGGTGCGGGCC GCGCTTTCCTTCGTGAAGGCCAACTGCGCTGAACTCGGTATCGACAAGAAGATGTTCGACGAGACCACGCTCCACATTCA CGTCCCGGCCGGGAGCATCCCTAAGGACGGCCCTTCCGCCGGGATCACCATGGCCACCGCAATCGTCTCGCTCTTCTCCG GACGCGCAGCGCGAAGGGATGTGGCCATGACCGGCGAGATGAGCCTCACCGGGCGGGTCCTCGCCATCGGCGGGCTCAAG GAGAAGGTGCTGGCCGCGCGGCGCGCCGGGGTGAAGAAGGTGCTGGCCCCCGCCAAGAACAAGAAGGACCTTGAGGACAT CCCCGAGAACGTGAAGAACGAACTGGAATTCTTCTTCGTAGAGGATATCCGCGAGGTGTTCGTTCAGGCTCTCAACCCCA CTTCCCCTGCTCCTACCGCCGCCACTTCTGCCCGTACTCCGGCGGGAGCGCCTCCTCCTCAATAA
Upstream 100 bases:
>100_bases ATGGGAGTCAGCGTAAACGGCAGTTGCGGTTGACACTGCAAAGGGTTCCAGTACTCTATTAAAGTTTTAAACCCCCTAAC AAAAACACCTGGAACCCGCC
Downstream 100 bases:
>100_bases CTAAATCGTCCCCCCTCCCCACCCAGCTGGGCGAGGGGGGATTCCCCGCCATCCCCAAGCTATCCTCCCCAGCATCTTTA AGCCCCCTTCCCCCCTTGCG
Product: ATP-dependent Lon protease
Products: NA
Alternate protein names: ATP-dependent protease La
Number of amino acids: Translated: 794; Mature: 793
Protein sequence:
>794_residues MTENITINMPEIVPLYPLREIIAFPYMVFTIFLKQEDMPPFEEAVLFNNLVALVKLREEPTGELFPALHEIGTLCKVMQI NKLAGGGAKVVLEGVIRVRLLAIVQQTPVALSRLEPVREFAEKSMVSEALVGSLNALLKIALSYGRPLPDDVMKMIDFID NPARLSDLVALYLNLPIDELQKLLETVDPLERLKKVYMHLTNEVQRLQIKGEVQAEVTKKVGKSQKEFLLREQMKQIQEE LGEEDSRLGEANELRSKVESAHMPEDVRRIAEKEMRRLERINPASPEYTVSRTYLDYLTTIPWQVSTPDNRDINQAETIL NEDHYDLKKVKERILEYLAVRSLKDKMKGPILCFVGPPGVGKTSLGKSIARTLGRKFIRISLGGMRDEAEIRGHRRTYIG ALPGRIIQEINRAGSNNPVFMLDEVDKIGADFRGDPASALLEVLDPEQNFSFTDHYLDVPFDLTNVMFITTANQLDPIPA PLKDRMEVITLSGYTDEEKLNIAKSYLVAREVEENGLASMAPQFTDEAIYRVTHDYTREAGVRNLQRNIASICRKIAKEV AQGKKARPIVNPETVSELLGAPKFFDEVASEKDRVGVATGLAWTESGGDIIFVEATKMKGKEDLILTGSLGEVMKESVRA ALSFVKANCAELGIDKKMFDETTLHIHVPAGSIPKDGPSAGITMATAIVSLFSGRAARRDVAMTGEMSLTGRVLAIGGLK EKVLAARRAGVKKVLAPAKNKKDLEDIPENVKNELEFFFVEDIREVFVQALNPTSPAPTAATSARTPAGAPPPQ
Sequences:
>Translated_794_residues MTENITINMPEIVPLYPLREIIAFPYMVFTIFLKQEDMPPFEEAVLFNNLVALVKLREEPTGELFPALHEIGTLCKVMQI NKLAGGGAKVVLEGVIRVRLLAIVQQTPVALSRLEPVREFAEKSMVSEALVGSLNALLKIALSYGRPLPDDVMKMIDFID NPARLSDLVALYLNLPIDELQKLLETVDPLERLKKVYMHLTNEVQRLQIKGEVQAEVTKKVGKSQKEFLLREQMKQIQEE LGEEDSRLGEANELRSKVESAHMPEDVRRIAEKEMRRLERINPASPEYTVSRTYLDYLTTIPWQVSTPDNRDINQAETIL NEDHYDLKKVKERILEYLAVRSLKDKMKGPILCFVGPPGVGKTSLGKSIARTLGRKFIRISLGGMRDEAEIRGHRRTYIG ALPGRIIQEINRAGSNNPVFMLDEVDKIGADFRGDPASALLEVLDPEQNFSFTDHYLDVPFDLTNVMFITTANQLDPIPA PLKDRMEVITLSGYTDEEKLNIAKSYLVAREVEENGLASMAPQFTDEAIYRVTHDYTREAGVRNLQRNIASICRKIAKEV AQGKKARPIVNPETVSELLGAPKFFDEVASEKDRVGVATGLAWTESGGDIIFVEATKMKGKEDLILTGSLGEVMKESVRA ALSFVKANCAELGIDKKMFDETTLHIHVPAGSIPKDGPSAGITMATAIVSLFSGRAARRDVAMTGEMSLTGRVLAIGGLK EKVLAARRAGVKKVLAPAKNKKDLEDIPENVKNELEFFFVEDIREVFVQALNPTSPAPTAATSARTPAGAPPPQ >Mature_793_residues TENITINMPEIVPLYPLREIIAFPYMVFTIFLKQEDMPPFEEAVLFNNLVALVKLREEPTGELFPALHEIGTLCKVMQIN KLAGGGAKVVLEGVIRVRLLAIVQQTPVALSRLEPVREFAEKSMVSEALVGSLNALLKIALSYGRPLPDDVMKMIDFIDN PARLSDLVALYLNLPIDELQKLLETVDPLERLKKVYMHLTNEVQRLQIKGEVQAEVTKKVGKSQKEFLLREQMKQIQEEL GEEDSRLGEANELRSKVESAHMPEDVRRIAEKEMRRLERINPASPEYTVSRTYLDYLTTIPWQVSTPDNRDINQAETILN EDHYDLKKVKERILEYLAVRSLKDKMKGPILCFVGPPGVGKTSLGKSIARTLGRKFIRISLGGMRDEAEIRGHRRTYIGA LPGRIIQEINRAGSNNPVFMLDEVDKIGADFRGDPASALLEVLDPEQNFSFTDHYLDVPFDLTNVMFITTANQLDPIPAP LKDRMEVITLSGYTDEEKLNIAKSYLVAREVEENGLASMAPQFTDEAIYRVTHDYTREAGVRNLQRNIASICRKIAKEVA QGKKARPIVNPETVSELLGAPKFFDEVASEKDRVGVATGLAWTESGGDIIFVEATKMKGKEDLILTGSLGEVMKESVRAA LSFVKANCAELGIDKKMFDETTLHIHVPAGSIPKDGPSAGITMATAIVSLFSGRAARRDVAMTGEMSLTGRVLAIGGLKE KVLAARRAGVKKVLAPAKNKKDLEDIPENVKNELEFFFVEDIREVFVQALNPTSPAPTAATSARTPAGAPPPQ
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain
Homologues:
Organism=Homo sapiens, GI31377667, Length=768, Percent_Identity=39.84375, Blast_Score=555, Evalue=1e-158, Organism=Homo sapiens, GI21396489, Length=619, Percent_Identity=44.5880452342488, Blast_Score=544, Evalue=1e-154, Organism=Escherichia coli, GI1786643, Length=778, Percent_Identity=45.3727506426735, Blast_Score=688, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=721, Percent_Identity=40.7766990291262, Blast_Score=534, Evalue=1e-152, Organism=Caenorhabditis elegans, GI17556486, Length=542, Percent_Identity=41.6974169741697, Blast_Score=455, Evalue=1e-128, Organism=Saccharomyces cerevisiae, GI6319449, Length=671, Percent_Identity=41.2816691505216, Blast_Score=503, Evalue=1e-143, Organism=Drosophila melanogaster, GI221513036, Length=682, Percent_Identity=40.6158357771261, Blast_Score=536, Evalue=1e-152, Organism=Drosophila melanogaster, GI24666867, Length=682, Percent_Identity=40.6158357771261, Blast_Score=535, Evalue=1e-152,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): LON_GEOBB (B5EDX8)
Other databases:
- EMBL: CP001124 - RefSeq: YP_002137512.1 - ProteinModelPortal: B5EDX8 - MEROPS: S16.001 - GeneID: 6783522 - GenomeReviews: CP001124_GR - KEGG: gbm:Gbem_0689 - HOGENOM: HBG566281 - OMA: YLLREQM - ProtClustDB: CLSK828095 - GO: GO:0005737 - GO: GO:0006508 - InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 - PRINTS: PR00830 - SMART: SM00382 - TIGRFAMs: TIGR00763
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C; SSF88697 PUA-like; SSF54211 Ribosomal_S5_D2-typ_fold
EC number: =3.4.21.53
Molecular weight: Translated: 88191; Mature: 88060
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS01046 LON_SER
Important sites: ACT_SITE 679-679 ACT_SITE 722-722
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTENITINMPEIVPLYPLREIIAFPYMVFTIFLKQEDMPPFEEAVLFNNLVALVKLREEP CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC TGELFPALHEIGTLCKVMQINKLAGGGAKVVLEGVIRVRLLAIVQQTPVALSRLEPVREF CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH AEKSMVSEALVGSLNALLKIALSYGRPLPDDVMKMIDFIDNPARLSDLVALYLNLPIDEL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH QKLLETVDPLERLKKVYMHLTNEVQRLQIKGEVQAEVTKKVGKSQKEFLLREQMKQIQEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LGEEDSRLGEANELRSKVESAHMPEDVRRIAEKEMRRLERINPASPEYTVSRTYLDYLTT HCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC IPWQVSTPDNRDINQAETILNEDHYDLKKVKERILEYLAVRSLKDKMKGPILCFVGPPGV CCEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC GKTSLGKSIARTLGRKFIRISLGGMRDEAEIRGHRRTYIGALPGRIIQEINRAGSNNPVF CHHHHHHHHHHHHHHHEEEEECCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCCEE MLDEVDKIGADFRGDPASALLEVLDPEQNFSFTDHYLDVPFDLTNVMFITTANQLDPIPA EEECHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCHHCEEEEEECCCCCCCCC PLKDRMEVITLSGYTDEEKLNIAKSYLVAREVEENGLASMAPQFTDEAIYRVTHDYTREA CHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHH GVRNLQRNIASICRKIAKEVAQGKKARPIVNPETVSELLGAPKFFDEVASEKDRVGVATG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCC LAWTESGGDIIFVEATKMKGKEDLILTGSLGEVMKESVRAALSFVKANCAELGIDKKMFD CEEECCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC ETTLHIHVPAGSIPKDGPSAGITMATAIVSLFSGRAARRDVAMTGEMSLTGRVLAIGGLK CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCEEECCCEECCCEEEECCHH EKVLAARRAGVKKVLAPAKNKKDLEDIPENVKNELEFFFVEDIREVFVQALNPTSPAPTA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ATSARTPAGAPPPQ CCCCCCCCCCCCCC >Mature Secondary Structure TENITINMPEIVPLYPLREIIAFPYMVFTIFLKQEDMPPFEEAVLFNNLVALVKLREEP CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC TGELFPALHEIGTLCKVMQINKLAGGGAKVVLEGVIRVRLLAIVQQTPVALSRLEPVREF CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH AEKSMVSEALVGSLNALLKIALSYGRPLPDDVMKMIDFIDNPARLSDLVALYLNLPIDEL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH QKLLETVDPLERLKKVYMHLTNEVQRLQIKGEVQAEVTKKVGKSQKEFLLREQMKQIQEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LGEEDSRLGEANELRSKVESAHMPEDVRRIAEKEMRRLERINPASPEYTVSRTYLDYLTT HCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC IPWQVSTPDNRDINQAETILNEDHYDLKKVKERILEYLAVRSLKDKMKGPILCFVGPPGV CCEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC GKTSLGKSIARTLGRKFIRISLGGMRDEAEIRGHRRTYIGALPGRIIQEINRAGSNNPVF CHHHHHHHHHHHHHHHEEEEECCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCCEE MLDEVDKIGADFRGDPASALLEVLDPEQNFSFTDHYLDVPFDLTNVMFITTANQLDPIPA EEECHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCHHCEEEEEECCCCCCCCC PLKDRMEVITLSGYTDEEKLNIAKSYLVAREVEENGLASMAPQFTDEAIYRVTHDYTREA CHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHH GVRNLQRNIASICRKIAKEVAQGKKARPIVNPETVSELLGAPKFFDEVASEKDRVGVATG HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCC LAWTESGGDIIFVEATKMKGKEDLILTGSLGEVMKESVRAALSFVKANCAELGIDKKMFD CEEECCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC ETTLHIHVPAGSIPKDGPSAGITMATAIVSLFSGRAARRDVAMTGEMSLTGRVLAIGGLK CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCEEECCCEECCCEEEECCHH EKVLAARRAGVKKVLAPAKNKKDLEDIPENVKNELEFFFVEDIREVFVQALNPTSPAPTA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ATSARTPAGAPPPQ CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA