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The map label for this gene is secF-1 [H]

Identifier: 197116902

GI number: 197116902

Start: 611304

End: 612245

Strand: Direct

Name: secF-1 [H]

Synonym: Gbem_0504

Alternate gene names: 197116902

Gene position: 611304-612245 (Clockwise)

Preceding gene: 197116901

Following gene: 197116903

Centisome position: 13.25

GC content: 49.89

Gene sequence:

>942_bases
ATGCAACTTATCAGCAATACCAACATTGACTTTATCGGCAAAAGGAAAGTCAGCTTTGTCATATCGACTATCATTGCGAT
CATCGGCTTGATTGGTATCCTTCAAATCGCCAGGAACTCAGCCAACATGGGCATTGATTTTTCTGGAGGTACCTCGGTCC
AGCTAAGCTTCACACATCCTATCCCTCAGGAAAAAGCACGCGAACTGCTTTCCGACCACCTTTTCAGAGAGGTCAACTTG
CAGGAGATAAAGGGAGGAAACAGGATCCTGGTAAAGGTCGGGAAATCCGGGGCAGACGTTTCCGAAACGATCACGGCAGT
ATTTAAAAAGGAGTTTCCTGGCAACGCCTTTGTCGTCGAAAGCTCAACTGATGTCGGTCCCTCGATCGGTAACAAACTCA
AAACGGATACTCTGAAAGCTGTGGGCCTTTCCATGATCGGCATCATCCTCTATATCGCTTGGCGGTTCGATTTTAAATTC
GGAGTAGGTGCCATAGCCGCCACACTGCACGACGTGCTCGCAATGGTCGCTCTGTTTTACCTGATGAACAAGGAGATCAA
CCTTCTTTTCATAACCGCAGTCCTGACCATTGCCGGCTACTCCCTTACAGACACCGTGGTGGTTTTCGACAGGATCAGGG
AAAACCTGCATAAGTATGTGGATGACACCAAAGAGGGTCTGTTCAACAGGAGCATCAACGAAGTTCTCCCTAGAACCGTG
ATCACCTCACTGACCACATTCCTTGCAGCCATCTCCTTATTCCTGTTCGGCGGCGAGGTGATTCACGATTTTGCCCTGGC
ACTGGTAGCCGGCATCGTCATTGCCACATATTCATCCATATTCATAGCAAGCCCAATCGTTGCGGTGCTTGAGGCAAGGC
GGGGCGGATGGGAGTTGGCGGACGGGGACGGCTTAAGTGGAACCAGTGAGGAGGAACTGTAA

Upstream 100 bases:

>100_bases
ATCAACCTTTTTACCACGCTTGTCACAACCAAGGTGGTCTTTGACAGCGCCTTCAGCCGCTTTCAGATCAGACGGCTCAG
CATATAGAGAGGAAAAAACT

Downstream 100 bases:

>100_bases
AAAATGCACAACCTCGATCTCATCATGACAATAACCGGCGGCTTTACGGCAGCACTGCTATTTGGGTATCTTACCCATCG
CCTGGGCATGTCGACGATTG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MQLISNTNIDFIGKRKVSFVISTIIAIIGLIGILQIARNSANMGIDFSGGTSVQLSFTHPIPQEKARELLSDHLFREVNL
QEIKGGNRILVKVGKSGADVSETITAVFKKEFPGNAFVVESSTDVGPSIGNKLKTDTLKAVGLSMIGIILYIAWRFDFKF
GVGAIAATLHDVLAMVALFYLMNKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKYVDDTKEGLFNRSINEVLPRTV
ITSLTTFLAAISLFLFGGEVIHDFALALVAGIVIATYSSIFIASPIVAVLEARRGGWELADGDGLSGTSEEEL

Sequences:

>Translated_313_residues
MQLISNTNIDFIGKRKVSFVISTIIAIIGLIGILQIARNSANMGIDFSGGTSVQLSFTHPIPQEKARELLSDHLFREVNL
QEIKGGNRILVKVGKSGADVSETITAVFKKEFPGNAFVVESSTDVGPSIGNKLKTDTLKAVGLSMIGIILYIAWRFDFKF
GVGAIAATLHDVLAMVALFYLMNKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKYVDDTKEGLFNRSINEVLPRTV
ITSLTTFLAAISLFLFGGEVIHDFALALVAGIVIATYSSIFIASPIVAVLEARRGGWELADGDGLSGTSEEEL
>Mature_313_residues
MQLISNTNIDFIGKRKVSFVISTIIAIIGLIGILQIARNSANMGIDFSGGTSVQLSFTHPIPQEKARELLSDHLFREVNL
QEIKGGNRILVKVGKSGADVSETITAVFKKEFPGNAFVVESSTDVGPSIGNKLKTDTLKAVGLSMIGIILYIAWRFDFKF
GVGAIAATLHDVLAMVALFYLMNKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKYVDDTKEGLFNRSINEVLPRTV
ITSLTTFLAAISLFLFGGEVIHDFALALVAGIVIATYSSIFIASPIVAVLEARRGGWELADGDGLSGTSEEEL

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=292, Percent_Identity=32.8767123287671, Blast_Score=151, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 33916; Mature: 33916

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLISNTNIDFIGKRKVSFVISTIIAIIGLIGILQIARNSANMGIDFSGGTSVQLSFTHP
CCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCC
IPQEKARELLSDHLFREVNLQEIKGGNRILVKVGKSGADVSETITAVFKKEFPGNAFVVE
CCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE
SSTDVGPSIGNKLKTDTLKAVGLSMIGIILYIAWRFDFKFGVGAIAATLHDVLAMVALFY
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LMNKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKYVDDTKEGLFNRSINEVLPRTV
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ITSLTTFLAAISLFLFGGEVIHDFALALVAGIVIATYSSIFIASPIVAVLEARRGGWELA
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DGDGLSGTSEEEL
CCCCCCCCCCCCC
>Mature Secondary Structure
MQLISNTNIDFIGKRKVSFVISTIIAIIGLIGILQIARNSANMGIDFSGGTSVQLSFTHP
CCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCC
IPQEKARELLSDHLFREVNLQEIKGGNRILVKVGKSGADVSETITAVFKKEFPGNAFVVE
CCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE
SSTDVGPSIGNKLKTDTLKAVGLSMIGIILYIAWRFDFKFGVGAIAATLHDVLAMVALFY
CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LMNKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKYVDDTKEGLFNRSINEVLPRTV
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ITSLTTFLAAISLFLFGGEVIHDFALALVAGIVIATYSSIFIASPIVAVLEARRGGWELA
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DGDGLSGTSEEEL
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA