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The map label for this gene is secD-1 [H]

Identifier: 197116901

GI number: 197116901

Start: 609686

End: 611290

Strand: Direct

Name: secD-1 [H]

Synonym: Gbem_0503

Alternate gene names: 197116901

Gene position: 609686-611290 (Clockwise)

Preceding gene: 197116900

Following gene: 197116902

Centisome position: 13.21

GC content: 50.47

Gene sequence:

>1605_bases
ATGCCAAAGAGCATTTCATGGCGCATAACCATGATTGTATTTTTTGTACTCTTATCGTTTCTATACCTCACGCCTACTCT
GGTTTCCAACTTGCCTAACTGGTGGACAGGGTATTTCCCCAAAGACAAAATCCATCTGGGGCTTGACCTTCAGGGCGGCA
CCCACCTTGTAATGAAAGTGGATACGCAAAAAGCAGTTGAGGGTTATATCGATTTGATTGCCTCGGATCTCGAAGATTCA
CTCAATGTCCGTCGCATCCGCATTCATCAGATTAACCGGGTTGGTGAAGATGCCATACGACTGGCATTCTACGACGTGAA
TAGTGCGGAAAACGAGGCACAACTTATAAAGAAAAAATATCCAGAACTAGAGCAGATACAAATACGTGATTCTGAGGGTG
GGATGGTACACCTCGAATTCCGAATGGAAAAGAAGGCCGTGCAGGATAGGAAGGACAAGGCTGTTGCCCAGGCTCTTGAA
ACTATCCGCAACCGAATCGATCAGTTCGGGGTATTGGAGCCGGTAATACAGAGAGAAGGAATAGATCATATAGTGATCCA
ACTTCCAGGCATCACTGATCCCAAACGAGCTATTGAGTTGATCGGAAAAACTGCGCGCCTTGAATTCAAGCTCGTGGACG
AAAATCTCAGCGCATCGTCCTCCTCTCCCTATGCTATGCCGGACGATGCAGAGATTCTGATGGAGCAGCAATCGAATTCA
GCCACCGGAGCTGTTCAGGGAGTGCCTATTGTAGTGAAGAAAAAGGCCATCATCACCGGCGATCTCCTCACCGACGCTCA
AGTGAAGATTGATTCACAAAATAACGAACCATATGTGGCAATTGATTTCAATTCCACCGGTGCCAGGCTCTTCGACCAGG
TGACTGCTGCTAATGTAGGGAAACGCTTTGCTATTGTCCTTGATGGCAATGTGTACTCGGCACCGGTTATTCGGGAACGG
ATCTCCGGCGGCTCAGCGCAGATCTCCGGCAACTTCAACGAAAAGGAGGCTGCTGATCTGGCTATTGTCCTACGCGCGGG
ATCGCTTCCCGCCCCGGTGAAGATTGTGCAGAACGTCACGGTCGGTCCGTCGATAGGCGAGGATTCCATCTCCAAAGGGT
TGATGGCTGGTGGAATAGGCATCCTTCTGGTTGTGCTTTTCATGGTGTTTTACTACCGGATGGCAGGACTGGTGGCAAAT
TTCGGCATGGTGCTCAACGTGTTGTTTCTCCTGGGAGCGCTGGCGGCTCTCGGTGCCACGCTGACCTTGCCCGGTATCGC
GGCCATCGTTCTTTTGGTCGGCATGTCGGTTGACTCGAACGTGCTTATCTTTGAGCGGGTCAAAGAGGAAATCAGGCTTG
GCTGTACCCCAAAGATGAGTATCGATGCTGGATATGACAAGGCCTTCCTGACCGTCATGGACTCTCATGTTACCACCCTG
ATCACAGCGGCTGTCCTATTCCAGTTTGGGACAGGACCGGTCAAGGGATTCGCGGTCTCACTGAGCCTTGGCGTTATCAT
CAACCTTTTTACCACGCTTGTCACAACCAAGGTGGTCTTTGACAGCGCCTTCAGCCGCTTTCAGATCAGACGGCTCAGCA
TATAG

Upstream 100 bases:

>100_bases
CTTCGCCGTCTTCAGTGCGAGGTGCAAAGGTCCAGGCGCGCCCGATGTATTTCTGCGCTCGCAGCCAAGATAATCACAAC
AACTGGAAAGGACACACGCT

Downstream 100 bases:

>100_bases
AGAGGAAAAAACTATGCAACTTATCAGCAATACCAACATTGACTTTATCGGCAAAAGGAAAGTCAGCTTTGTCATATCGA
CTATCATTGCGATCATCGGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MPKSISWRITMIVFFVLLSFLYLTPTLVSNLPNWWTGYFPKDKIHLGLDLQGGTHLVMKVDTQKAVEGYIDLIASDLEDS
LNVRRIRIHQINRVGEDAIRLAFYDVNSAENEAQLIKKKYPELEQIQIRDSEGGMVHLEFRMEKKAVQDRKDKAVAQALE
TIRNRIDQFGVLEPVIQREGIDHIVIQLPGITDPKRAIELIGKTARLEFKLVDENLSASSSSPYAMPDDAEILMEQQSNS
ATGAVQGVPIVVKKKAIITGDLLTDAQVKIDSQNNEPYVAIDFNSTGARLFDQVTAANVGKRFAIVLDGNVYSAPVIRER
ISGGSAQISGNFNEKEAADLAIVLRAGSLPAPVKIVQNVTVGPSIGEDSISKGLMAGGIGILLVVLFMVFYYRMAGLVAN
FGMVLNVLFLLGALAALGATLTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRLGCTPKMSIDAGYDKAFLTVMDSHVTTL
ITAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTTKVVFDSAFSRFQIRRLSI

Sequences:

>Translated_534_residues
MPKSISWRITMIVFFVLLSFLYLTPTLVSNLPNWWTGYFPKDKIHLGLDLQGGTHLVMKVDTQKAVEGYIDLIASDLEDS
LNVRRIRIHQINRVGEDAIRLAFYDVNSAENEAQLIKKKYPELEQIQIRDSEGGMVHLEFRMEKKAVQDRKDKAVAQALE
TIRNRIDQFGVLEPVIQREGIDHIVIQLPGITDPKRAIELIGKTARLEFKLVDENLSASSSSPYAMPDDAEILMEQQSNS
ATGAVQGVPIVVKKKAIITGDLLTDAQVKIDSQNNEPYVAIDFNSTGARLFDQVTAANVGKRFAIVLDGNVYSAPVIRER
ISGGSAQISGNFNEKEAADLAIVLRAGSLPAPVKIVQNVTVGPSIGEDSISKGLMAGGIGILLVVLFMVFYYRMAGLVAN
FGMVLNVLFLLGALAALGATLTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRLGCTPKMSIDAGYDKAFLTVMDSHVTTL
ITAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTTKVVFDSAFSRFQIRRLSI
>Mature_533_residues
PKSISWRITMIVFFVLLSFLYLTPTLVSNLPNWWTGYFPKDKIHLGLDLQGGTHLVMKVDTQKAVEGYIDLIASDLEDSL
NVRRIRIHQINRVGEDAIRLAFYDVNSAENEAQLIKKKYPELEQIQIRDSEGGMVHLEFRMEKKAVQDRKDKAVAQALET
IRNRIDQFGVLEPVIQREGIDHIVIQLPGITDPKRAIELIGKTARLEFKLVDENLSASSSSPYAMPDDAEILMEQQSNSA
TGAVQGVPIVVKKKAIITGDLLTDAQVKIDSQNNEPYVAIDFNSTGARLFDQVTAANVGKRFAIVLDGNVYSAPVIRERI
SGGSAQISGNFNEKEAADLAIVLRAGSLPAPVKIVQNVTVGPSIGEDSISKGLMAGGIGILLVVLFMVFYYRMAGLVANF
GMVLNVLFLLGALAALGATLTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRLGCTPKMSIDAGYDKAFLTVMDSHVTTLI
TAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTTKVVFDSAFSRFQIRRLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=523, Percent_Identity=34.9904397705545, Blast_Score=317, Evalue=9e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 58329; Mature: 58198

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSISWRITMIVFFVLLSFLYLTPTLVSNLPNWWTGYFPKDKIHLGLDLQGGTHLVMKV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE
DTQKAVEGYIDLIASDLEDSLNVRRIRIHQINRVGEDAIRLAFYDVNSAENEAQLIKKKY
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCEEEEEEEECCCCCHHHHHHHHHC
PELEQIQIRDSEGGMVHLEFRMEKKAVQDRKDKAVAQALETIRNRIDQFGVLEPVIQREG
CCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
IDHIVIQLPGITDPKRAIELIGKTARLEFKLVDENLSASSSSPYAMPDDAEILMEQQSNS
CCEEEEECCCCCCHHHHHHHHCCHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCC
ATGAVQGVPIVVKKKAIITGDLLTDAQVKIDSQNNEPYVAIDFNSTGARLFDQVTAANVG
CCCCCCCCEEEEECCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCC
KRFAIVLDGNVYSAPVIRERISGGSAQISGNFNEKEAADLAIVLRAGSLPAPVKIVQNVT
CEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCHHHCCEEEEEECCCCCCCHHHHHCCC
VGPSIGEDSISKGLMAGGIGILLVVLFMVFYYRMAGLVANFGMVLNVLFLLGALAALGAT
CCCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRLGCTPKMSIDAGYDKAFLTVMDSHVTTL
HCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ITAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTTKVVFDSAFSRFQIRRLSI
HHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
PKSISWRITMIVFFVLLSFLYLTPTLVSNLPNWWTGYFPKDKIHLGLDLQGGTHLVMKV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE
DTQKAVEGYIDLIASDLEDSLNVRRIRIHQINRVGEDAIRLAFYDVNSAENEAQLIKKKY
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCEEEEEEEECCCCCHHHHHHHHHC
PELEQIQIRDSEGGMVHLEFRMEKKAVQDRKDKAVAQALETIRNRIDQFGVLEPVIQREG
CCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
IDHIVIQLPGITDPKRAIELIGKTARLEFKLVDENLSASSSSPYAMPDDAEILMEQQSNS
CCEEEEECCCCCCHHHHHHHHCCHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCC
ATGAVQGVPIVVKKKAIITGDLLTDAQVKIDSQNNEPYVAIDFNSTGARLFDQVTAANVG
CCCCCCCCEEEEECCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCC
KRFAIVLDGNVYSAPVIRERISGGSAQISGNFNEKEAADLAIVLRAGSLPAPVKIVQNVT
CEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCHHHCCEEEEEECCCCCCCHHHHHCCC
VGPSIGEDSISKGLMAGGIGILLVVLFMVFYYRMAGLVANFGMVLNVLFLLGALAALGAT
CCCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRLGCTPKMSIDAGYDKAFLTVMDSHVTTL
HCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ITAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTTKVVFDSAFSRFQIRRLSI
HHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA