| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is 197116900
Identifier: 197116900
GI number: 197116900
Start: 608857
End: 609387
Strand: Direct
Name: 197116900
Synonym: Gbem_0502
Alternate gene names: NA
Gene position: 608857-609387 (Clockwise)
Preceding gene: 197116896
Following gene: 197116901
Centisome position: 13.19
GC content: 42.94
Gene sequence:
>531_bases ATGGTGGAGGATGATGATCGTGGTGTTGGCAGCAGGTGGTGGAAGTGGGTGTGCTATGTACAAGTGAATGCAACTGACCT TGAGCTGCTGGCACGTCAGCCTGCAATGCATGTGTGCAATAAAGTCATGGCTAGCAATCTATTCTTGCAACTAACTATGA CTTCATATAGAGTTTGTATCATGAAGTTATTTACTGCTAATTCCACAACGAAAAAATTTATGCTGCCTTTAATCCTGGCT GTAGCAGTCTTTTTTGTTACGCAAGGGATAGAAGTACCTAATTTCAGTGATTTGCTGGAACCTCAGCTTTCCTTGTCACA GAAATCCAACGGCTCCGATACCGCTGTTGTTAAAACTCTGACAAAATGCTCGCATATAAAATCCATAAAAAACGTCAATT TTTCAGCTCTCGTCAGCAATGCATTCCAGATAAATAGTCCAGTCGTTCCCGTTACGGTTTTTCAGCATCAATCCCAATCC TTTATCTCGTCTGTAGTCTCAATTCTTCCTGCCAGAGCACCACCCGCGTAG
Upstream 100 bases:
>100_bases AGGGTGAGGAAGAAGGAGAGAGGAGGAGGAGAGAGAGGAGGAGGTGGTGGTGAAATGGTGGAGGAGGTGGTGGTGAAATG GTGGAGGAGGTGGTGGTGAA
Downstream 100 bases:
>100_bases CACACATCATTCCTCAGTAGCAGCCATAGTTTGCACTTTCCGCGCGTTTTTTTGCGCAGGAAAAAATGCGTTCGCAGCGT ATTCATTTTTTAATGCACGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MVEDDDRGVGSRWWKWVCYVQVNATDLELLARQPAMHVCNKVMASNLFLQLTMTSYRVCIMKLFTANSTTKKFMLPLILA VAVFFVTQGIEVPNFSDLLEPQLSLSQKSNGSDTAVVKTLTKCSHIKSIKNVNFSALVSNAFQINSPVVPVTVFQHQSQS FISSVVSILPARAPPA
Sequences:
>Translated_176_residues MVEDDDRGVGSRWWKWVCYVQVNATDLELLARQPAMHVCNKVMASNLFLQLTMTSYRVCIMKLFTANSTTKKFMLPLILA VAVFFVTQGIEVPNFSDLLEPQLSLSQKSNGSDTAVVKTLTKCSHIKSIKNVNFSALVSNAFQINSPVVPVTVFQHQSQS FISSVVSILPARAPPA >Mature_176_residues MVEDDDRGVGSRWWKWVCYVQVNATDLELLARQPAMHVCNKVMASNLFLQLTMTSYRVCIMKLFTANSTTKKFMLPLILA VAVFFVTQGIEVPNFSDLLEPQLSLSQKSNGSDTAVVKTLTKCSHIKSIKNVNFSALVSNAFQINSPVVPVTVFQHQSQS FISSVVSILPARAPPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19481; Mature: 19481
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVEDDDRGVGSRWWKWVCYVQVNATDLELLARQPAMHVCNKVMASNLFLQLTMTSYRVCI CCCCCCCCCCHHHEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHEEEHHHHHHHHH MKLFTANSTTKKFMLPLILAVAVFFVTQGIEVPNFSDLLEPQLSLSQKSNGSDTAVVKTL HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHCCCCCCHHHHHHHH TKCSHIKSIKNVNFSALVSNAFQINSPVVPVTVFQHQSQSFISSVVSILPARAPPA HHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MVEDDDRGVGSRWWKWVCYVQVNATDLELLARQPAMHVCNKVMASNLFLQLTMTSYRVCI CCCCCCCCCCHHHEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHEEEHHHHHHHHH MKLFTANSTTKKFMLPLILAVAVFFVTQGIEVPNFSDLLEPQLSLSQKSNGSDTAVVKTL HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHCCCCCCHHHHHHHH TKCSHIKSIKNVNFSALVSNAFQINSPVVPVTVFQHQSQSFISSVVSILPARAPPA HHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA