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The map label for this gene is ytbD [H]

Identifier: 194738242

GI number: 194738242

Start: 298919

End: 300094

Strand: Direct

Name: ytbD [H]

Synonym: SeSA_A0287

Alternate gene names: 194738242

Gene position: 298919-300094 (Clockwise)

Preceding gene: 194737949

Following gene: 194734062

Centisome position: 6.35

GC content: 56.29

Gene sequence:

>1176_bases
ATGCCTCTCGCTTTATTTGCACTGACAATAAGTGCCTTCGCTATCGGTACGACTGAGTTTGTGATTGTCGGCCTGGTGCC
GACCATTGCACAACAACTGGCTGTCTCGTTACCTTCCGCCGGAATGCTGGTTTCAATCTATGCGCTGGGGGTGGCTATTG
GCGCGCCGGTGCTGACCGCTTTGACCGGACGCCTGCCGCGTAAGCAGTTACTGGTTGCGCTGATGGTCTTGTTTACGGTG
GGGAATTTGCTGGCATGGCAGGCGCCGGGCTATATGACATTAATCGCTGCCCGTTTGCTGACGGGCCTGGCGCACGGCGT
GTTCTTCTCGATTGGCTCTACCATCGCGACAAGTCTGGTGCCAAAAGAGAAAGCGGCTTCTGCGATCGCTATTATGTTTG
GTGGTTTAACGGTCGCGTTGGTCACGGGCGTTCCGCTGGGCACATTTATCGGTCAGCATTTTGGCTGGCGTGAGACCTTC
CTTGCGGTATCACTGTTAGGCGTGATTGCGCTGATGAGTAGTCAATTGCTGATCCCGGCCAATATCCCCGGTCGGGCGGC
CGCCAGCATTCGTGACCAGGTGAAAGTACTGACTCATCCTCGTCTGTTGCTGATTTACGCTGTTACGGCGCTGGGCTACG
GCGGGGTATTCACGGCATTCACCTTTCTGGCGCCGATGATGCAGGATCTGGCGGGATTCTCCCCGGCAGCGGTAAGCTGG
ATCCTACTGGGGTATGGCGTATCTGTGGCTATCGGCAATATCTGGGGCGGTAAACTGGCGGATAAGCATGGTGCCGTGCC
GGCGCTGAAATTCATTTTCGCCGCGCTGTTTGTTCTGCTGATGGTCTTCCAGGTGACGGCCTCCACGCAGTATGCCGCGC
TGGCTACCATTCTGGTGATGGGGATCTTTGCCTTCGGTAACGTACCGGGGTTGCAGGTCTACGTGGTACAGAAAGCGGAA
CAATTTACGCCCAATGCCGTTGATGTGGCGTCAGGTCTGAACATTGCGGCGTTTAACATTGGTATTGCGCTGGGCTCCGT
GATTGGCGGGCAAACGGTGGCGCATTACGGTTTGGCGCAGACGCCGTGGATTGGCGCCCTCATTGTTCTGGTGGCTTTCC
TGCTGATGGGTGTCAGCGGACGTCTTGATAAACCTGTACGCATTGCTCTGGAGTAA

Upstream 100 bases:

>100_bases
GCTCCTGCAGCAAAATTAAATTGATATTTTGGCTATTTTTGTCATTAAAACATCCAGGCATACTGCGTGTCATCTGATTA
CTGTTGTTATGGAGTTATGT

Downstream 100 bases:

>100_bases
ATTATTGATGTAAGCGCCTACTTACAAAACAAACTGCAATTGTTCGTTGAAAGTGAGTGCTAAAATCCCTATAACAGAAG
AACCAGTCCGGTTGAGGACT

Product: inner membrane transport protein YdhP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVSIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTV
GNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGIFAFGNVPGLQVYVVQKAE
QFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE

Sequences:

>Translated_391_residues
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVSIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTV
GNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF
LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGIFAFGNVPGLQVYVVQKAE
QFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE
>Mature_390_residues
PLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVSIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTVG
NLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFL
AVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSWI
LLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVMGIFAFGNVPGLQVYVVQKAEQ
FTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=378, Percent_Identity=42.0634920634921, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI1786595, Length=352, Percent_Identity=31.25, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1787808, Length=366, Percent_Identity=29.2349726775956, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693198, Length=387, Percent_Identity=24.5478036175711, Blast_Score=107, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40571; Mature: 40440

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVSIYALGVAIGAPVLTA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRLPRKQLLVALMVLFTVGNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLV
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALMSSQLLIPA
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEC
NIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVM
HHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GIFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQ
HHHHHCCCCCEEEEEEECHHHCCCCHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHCCCCC
TPWIGALIVLVAFLLMGVSGRLDKPVRIALE
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
>Mature Secondary Structure 
PLALFALTISAFAIGTTEFVIVGLVPTIAQQLAVSLPSAGMLVSIYALGVAIGAPVLTA
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRLPRKQLLVALMVLFTVGNLLAWQAPGYMTLIAARLLTGLAHGVFFSIGSTIATSLV
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETFLAVSLLGVIALMSSQLLIPA
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEC
NIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFTAFTFLAPMMQDLAGFSPAAVSW
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
ILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAALFVLLMVFQVTASTQYAALATILVM
HHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GIFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLNIAAFNIGIALGSVIGGQTVAHYGLAQ
HHHHHCCCCCEEEEEEECHHHCCCCHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHCCCCC
TPWIGALIVLVAFLLMGVSGRLDKPVRIALE
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]