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The map label for this gene is yafD [C]

Identifier: 194734062

GI number: 194734062

Start: 300226

End: 301026

Strand: Direct

Name: yafD [C]

Synonym: SeSA_A0288

Alternate gene names: 194734062

Gene position: 300226-301026 (Clockwise)

Preceding gene: 194738242

Following gene: 194734206

Centisome position: 6.38

GC content: 53.06

Gene sequence:

>801_bases
GTGCGAAAAAACACCTATGCGATGCGCTATGTTGCCGGACAGCCCGCCGAGCGGATTTTGCCGCCAGGGTCGTTTGCGAG
CATCGGCCAAGCATTGCCCGCCGGGGAACCGCTAAGCAGTGAAGAGCGGATCCGTATCCTCGTGTGGAATATATTCAAGC
AGCAGCGAGCCGAATGGTTATCGGTGCTGAAGAACTACGGTAAAGATGCGCATCTGGTCCTGTTGCAGGAGGCACAGACG
ACGCCTGAACTGGTACAGTTTGCCACCGCTAACTATCTTGCCGCCGATCAGGTTCCCGCTTTTGTATTACCTCAGCATCC
GTCTGGCGTCATGACGCTTTCTGCCGCCCATCCTGTTTACTGCTGCCCTTTACGGGAAAGAGAACCGATTTTACGTTTGG
CGAAATCAGCCCTGGTGACGGTATATCCCTTGCCGGATACCCGTTTATTAATGGTAGTAAATGTTCATGCGGTAAATTTT
AGTCTGGGCGTGGACGTATACAGTAAGCAGTTACTTCCGATCGGCGACCAGATTGCGCACCATAGCGGCCCTGTCATTAT
GGCGGGTGATTTTAATGCCTGGAGCCGTCCACGTATGAATGCGTTGTACCGCTTTGCACGTGAGATGTCGCTGCGCCAGG
TGCGTTTCACTGACGATCAGCGTCGTCGTGCATTTGGACGACCGCTGGATTTTGTTTTTTATCGTGGGTTAAACGTGAAT
GAAGCCTCCGTACTGGTGACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAACCTGAGCAATA
A

Upstream 100 bases:

>100_bases
AACTGCAATTGTTCGTTGAAAGTGAGTGCTAAAATCCCTATAACAGAAGAACCAGTCCGGTTGAGGACTGGTTGACGTTA
CAGAGGTTTGAAAGTCAAAA

Downstream 100 bases:

>100_bases
AGGTGCGTCAGGTCTGCCGTGGGGCAGGCCTCTGCGGGTGCTGCCCTCTATTTTTCTCATAACAGAAGGGCACTACCATG
ACAACGCATTCCCACCATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQT
TPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNF
SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVN
EASVLVTRASDHNPLLVEFSPGKPEQ

Sequences:

>Translated_266_residues
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQT
TPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNF
SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVN
EASVLVTRASDHNPLLVEFSPGKPEQ
>Mature_266_residues
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQT
TPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNF
SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVN
EASVLVTRASDHNPLLVEFSPGKPEQ

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=266, Percent_Identity=96.9924812030075, Blast_Score=535, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 29904; Mature: 29904

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWL
CCCCCEEEEEECCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHH
SVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVY
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCEECCCCCEEEECCCCCCEEEEECCCCEE
CCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVYSKQLLPIGDQIAH
ECCCCCCCHHHHHHHHHEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHHHHH
HSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVN
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCCEEEEEECCCCCC
EASVLVTRASDHNPLLVEFSPGKPEQ
CCEEEEEECCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MRKNTYAMRYVAGQPAERILPPGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWL
CCCCCEEEEEECCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHH
SVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVY
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCEECCCCCEEEECCCCCCEEEEECCCCEE
CCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVYSKQLLPIGDQIAH
ECCCCCCCHHHHHHHHHEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHHHHH
HSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVN
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCCEEEEEECCCCCC
EASVLVTRASDHNPLLVEFSPGKPEQ
CCEEEEEECCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA