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The map label for this gene is ycgR [H]

Identifier: 194738062

GI number: 194738062

Start: 1875275

End: 1876009

Strand: Direct

Name: ycgR [H]

Synonym: SeSA_A1940

Alternate gene names: 194738062

Gene position: 1875275-1876009 (Clockwise)

Preceding gene: 194737640

Following gene: 194734546

Centisome position: 39.82

GC content: 52.65

Gene sequence:

>735_bases
GTGAGTGGTTACAATGAGCAGTTCCTGAAAAAAAATCCATTAGCGATATTAGGCGTGCTACGGGATTTAAATAAAAATCA
GGTTCCACTGCGTATTTCATGGGCGCATGGTCAATTCATCAGTAAAATTTTGGCGGTAGACCCGGAAAAACTCATCGTAG
ATTACGGCAGCCAGGAATATGAAAATAGCGCCGTATTACGTGCCGGGCAGGTAGCCATTATCGCAGAAACGCAGGGCGCA
AAAGTCGAGTTCACGTTGCCGCAACTCGTTACAGGCGAATATCAGCGGCTGCCGGCCTTTATCACGCCCCTGCCGTCGTC
ACTGTGGTTTGTCCAGCGCCGGGAGTATTTTCGCATTGGCGCGCCGCTGTATCCGCCTTATTACGGCGTCACCACGCTAC
CGGACACCCGTACGTTACGTTTTCGCCTGTTTGATCTTTCCCTGGGCGGCATGGGCGCGCTACTGGAATCCGCCATCCCC
GACGGACTAATCGAAGGCGCACGCTTTTCGCAGGTTGAACTGAACATGGGGCCATGGGGGATTTTTCACGTTGACGCCCA
GCTTATCGCCATCAGCGAGCGTAAGGTGATTGATGGGAAAAATGAAACGATCACCACTCCCCGCCTGAGCTTTCGTTTCC
TTAACGTTAGCCCGGCGGTGGAGCGGGAGTTGCAGCGGATTATTTTTTCGCTTGAGCGCGACGCCCGAGAAAGAGCGAAT
AAAGTGCGAGAATAA

Upstream 100 bases:

>100_bases
TGATTTATCTCGCGGACATAAAAATTTATTTATCGCTATTAAGTTCTTTCTACCGATGCCGATAACCCAACGATAGTCTG
CGTATCAGGGGTTATTTCGT

Downstream 100 bases:

>100_bases
TCTTCACGCTAAACTACATGGCGTCCAGCGCCTGCTGAAGCTTCCAGATATAGCGCGGCGCCTGCGGCGCGGGATGATTA
TCAACAACATGTTCAAAAAA

Product: YcgR family protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR [H]

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSGYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKILAVDPEKLIVDYGSQEYENSAVLRAGQVAIIAETQGA
KVEFTLPQLVTGEYQRLPAFITPLPSSLWFVQRREYFRIGAPLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLESAIP
DGLIEGARFSQVELNMGPWGIFHVDAQLIAISERKVIDGKNETITTPRLSFRFLNVSPAVERELQRIIFSLERDARERAN
KVRE

Sequences:

>Translated_244_residues
MSGYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKILAVDPEKLIVDYGSQEYENSAVLRAGQVAIIAETQGA
KVEFTLPQLVTGEYQRLPAFITPLPSSLWFVQRREYFRIGAPLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLESAIP
DGLIEGARFSQVELNMGPWGIFHVDAQLIAISERKVIDGKNETITTPRLSFRFLNVSPAVERELQRIIFSLERDARERAN
KVRE
>Mature_243_residues
SGYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKILAVDPEKLIVDYGSQEYENSAVLRAGQVAIIAETQGAK
VEFTLPQLVTGEYQRLPAFITPLPSSLWFVQRREYFRIGAPLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLESAIPD
GLIEGARFSQVELNMGPWGIFHVDAQLIAISERKVIDGKNETITTPRLSFRFLNVSPAVERELQRIIFSLERDARERANK
VRE

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Overexpression of this gene decreases swimming and swarming motility; those cells that are motile turn predominantly counterc

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body. Note=Localization lost in FliM mutants E-155 or E-160 [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=244, Percent_Identity=71.3114754098361, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 27607; Mature: 27476

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKILAVDPEKLIVDYGSQEY
CCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHEEEECCCCCC
ENSAVLRAGQVAIIAETQGAKVEFTLPQLVTGEYQRLPAFITPLPSSLWFVQRREYFRIG
CCCEEEEECCEEEEEECCCCEEEEECHHHHCCCHHHCCCEECCCCCHHHHHHHHCEEEEC
APLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLESAIPDGLIEGARFSQVELNMGPWG
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCHHHCCCCEEEEEECCCCCE
IFHVDAQLIAISERKVIDGKNETITTPRLSFRFLNVSPAVERELQRIIFSLERDARERAN
EEEECEEEEEEECCEEECCCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
KVRE
HCCC
>Mature Secondary Structure 
SGYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKILAVDPEKLIVDYGSQEY
CCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHEEEECCCCCC
ENSAVLRAGQVAIIAETQGAKVEFTLPQLVTGEYQRLPAFITPLPSSLWFVQRREYFRIG
CCCEEEEECCEEEEEECCCCEEEEECHHHHCCCHHHCCCEECCCCCHHHHHHHHCEEEEC
APLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLESAIPDGLIEGARFSQVELNMGPWG
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCHHHCCCCEEEEEECCCCCE
IFHVDAQLIAISERKVIDGKNETITTPRLSFRFLNVSPAVERELQRIIFSLERDARERAN
EEEECEEEEEEECCEEECCCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
KVRE
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]