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The map label for this gene is cydB [H]

Identifier: 194737941

GI number: 194737941

Start: 1869956

End: 1871092

Strand: Direct

Name: cydB [H]

Synonym: SeSA_A1935

Alternate gene names: 194737941

Gene position: 1869956-1871092 (Clockwise)

Preceding gene: 194737726

Following gene: 194734885

Centisome position: 39.71

GC content: 55.06

Gene sequence:

>1137_bases
ATGTTGGATTATGAAACGTTGCGGTTCATTTGGTGGCTGCTGATCGGCGTTATCCTGGTGGCATTTATGGTAACTGACGG
GTTTGATATGGGTGTCGGTTGCCTGCTCCCGCTGATAGCGCGCAACGATGACGAACGCCGGGTGTTGATCAATAGCGTCG
GCGCCCACTGGGAAGGAAACCAGGTATGGTTGATTCTCGCGGGCGGGGCATTATTCGCCGCCTGGCCACGGGTCTATGCC
GCCGCGTTTTCCGGTTTTTATGTGGCGATGATCCTGGTGCTGTGTGCCCTCTTCTTTCGCCCGCTGGCCTTTGATTATCG
GGGAAAAATCGCCAATGCCCGCTGGCGCGCGCTGTGGGATACCGGTCTGGTTATTGGCAGCCTGGTTCCCCCAGTCGTAT
TCGGTATCGCGTTCGGCAACCTGTTTTTAGGCGTGCCGTTTGCCTTCACGCCGCAGCTTCATGTTGACTATTGTGGCACC
TTCTGGCAGTTACTCTCGCCCTTTGCCCTACTGTGTGGATTATTGAGTCTGTCGTTGGTGATTATGCAAGGAGGCGTCTG
GTTACAGTTGAAAACGGAGGGCGTTATTCGTCAACGGGCTCTGTCGGCCACCCGCCACAGCGCGCTGCTGATCGTGATCT
GCTTCCTGCTGGCCGGTTACTGGCTGTGGGCCGGCGTTGATGGCTTTGTCTTACTCACGCAAGATGCCAACGGCCCTTCC
AATCCGCTCTTAAAAGGCGTGGCGATACTCCCTGGCGCATGGATGAACCACTTTATACGCTCGCCGCTACTGCTCATCAT
CCCGTTGCTCGGTATGATCCTGCCGATTCTGGCTTTCTATGCCTGCCTTCGCGGTCAGACTATTCGTGGATTTCTGTTCG
CTTCCCTGACCCAGGCCTGCGTCATCTTTACCGCCGGCATAACGCTATTTCCTTTTGTGATGCCGTCGAGTGTTAGTCCT
CTCTCCAGCCTGACGGTGTGGGACAGCACCTCCAGCCAGATGACGCTCGAAATCATGCTGGTGATTGTGCTGATTTTTCT
GCCGATCGTACTGCTCTATACGCTGTGGAGCTATTACAAAATGTTGGGGCGTATCAACCTGGAAACCCTCCGCCGCAACG
ATCATGAACTTTATTAG

Upstream 100 bases:

>100_bases
TAATCGCGGAAGTCTATCTGATGCAGAAGTACGCGCGTCTTGGGCCAAGCGCCATGCAACATCAACAACAAGCGCAACAA
CAGGGATAAAGGAGACAATC

Downstream 100 bases:

>100_bases
GGAGCGGAAGCGATGTGGTATTTACTGTGGTTTGTCGGCATTCTGCTGATGTGCTCACTGTCGACACTGGTGTTGGTATG
GCTTGAGTCGCGTCAACAAT

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYCGT
FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSP
LSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLETLRRNDHELY

Sequences:

>Translated_378_residues
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYCGT
FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSP
LSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLETLRRNDHELY
>Mature_378_residues
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYA
AAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYCGT
FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSP
LSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLETLRRNDHELY

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=378, Percent_Identity=80.4232804232804, Blast_Score=616, Evalue=1e-178,
Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=55.6728232189974, Blast_Score=436, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42105; Mature: 42105

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEHHHHCCCCCCCC
QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYCGTFWQLLSPFALLCGLLSLSLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
HHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQAC
CHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYK
HHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGRINLETLRRNDHELY
HHHCCCHHHHHCCCCCCC
>Mature Secondary Structure
MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEHHHHCCCCCCCC
QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYCGTFWQLLSPFALLCGLLSLSLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS
HHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQAC
CHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYK
HHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGRINLETLRRNDHELY
HHHCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]