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The map label for this gene is cydA [H]

Identifier: 194737726

GI number: 194737726

Start: 1868400

End: 1869944

Strand: Direct

Name: cydA [H]

Synonym: SeSA_A1934

Alternate gene names: 194737726

Gene position: 1868400-1869944 (Clockwise)

Preceding gene: 194737384

Following gene: 194737941

Centisome position: 39.68

GC content: 55.73

Gene sequence:

>1545_bases
ATGTGGGATGTCATTGACTTATCGCGCTGGCAGTTTGCGCTGACCGCGCTGTATCACTTTTTATTTGTTCCTCTTACGCT
TGGGCTGATTTTTTTGCTGGCCGTCATGGAGACGATCTATGTGGTGACGGGGAAAACCGTCTACCGCGATATGACGCGTT
TCTGGGGCAAGCTCTTCGGGATCAATTTTGCTCTCGGTGTGGCTACCGGCCTGACCATGGAGTTTCAGTTCGGGACTAAC
TGGTCGCTCTATTCCAACTATGTGGGCGATATTTTCGGCGCGCCGCTGGCGATGGAAGCGTTACTGGCCTTCTTTCTCGA
ATCCACTTTTGTCGGCCTGTTCTTTTTCGGCTGGCAGCGGCTGAATAAATACCAACACCTGCTGGTCACCTGGCTGGTGG
CCTTCGGCTCCAATATTTCAGCATTATGGATTCTGAATGCCAATGGCTGGATGCAGCATCCTACCGGCGCTCATTTCAAC
ATCGATACGTTACGGATGGAAATGAGCAGCTTCAGCGATCTGGTCTTTAACCCGGTGAGCCAGGTGAAATTCGTCCATAC
CGTCATGTCCGGTTATGTCACCGGCGCCATGTTTATTATGTCCATCAGCGCCTGGTATCTGCTACGTGGCCGCGAGCGTG
AAGTGGCCTTGCGCTCGTTTGCTATCGGCTCAGTATTCGGCACCCTGGCCATTCTGGGAACCCTGCAACTGGGGGACAGT
TCGGCCTACGAGGTCGCCCAAATTCAGCCGGTGAAACTGGCGGCGATGGAAGGCGAATGGCAAACCGAACCCGCGCCCGC
GCCGTTTCATCTGATTGCCTGGCCGCAGCAGGAACAGGAGCGTAATGCGTTTGCCGTGAAGATCCCCGCTCTGCTGGGTA
TTCTGGCCACCCATTCGCTGGATACGCCGGTTCCGGGGTTAAAAAACCTGATGGACGACACTCTGCCGCGCCTGAAGCGT
GGCCGGGAGGCCTGGCTACTCATGCAGGAGATAGCGCAAGGCAATCGCTCGCCGCAGGTACTGAATGCGTTTCACGCCGT
TGAGGGCGATCTGGGGTACGGCATTCTGCTGGCGAAATATGCCCCGGATATGAACCATGTGACGCCGGAGCAGTATCGTG
CGGCCCAGCGTGGCGCTATTCCTCAGGTGGCGCCGGTGTTCTGGAGTTTCCGTATTATGGTCGGCTGCGGTTCGCTGCTG
TTAGTGGTGATGTTGATTGCGTTGATACAGACGCTACGAATGCGTATCGACCAGCATCGCTGGGTATTGCGTATGACGCT
CTGGAGCCTGCCGTTACCGTGGATTGCCATTGAAGCCGGTTGGTTTATGACGGAGTTTGGCCGTCAGCCCTGGGCGATTC
AGGACATTCTGCCGACCTGGTACGCTCACTCCGCGCTGACGCCGGGCCAGTTGGCCTTCTCAATGGGACTTATCCTCGGA
CTTTACACCCTGTTTTTAATCGCGGAAGTCTATCTGATGCAGAAGTACGCGCGTCTTGGGCCAAGCGCCATGCAACATCA
ACAACAAGCGCAACAACAGGGATAA

Upstream 100 bases:

>100_bases
TCTGCCGATGGCTGGAGACGCGATAACGCTCTCAACAGGAACGTAACCGGTGTCCGGTACTGATTAGCTTTTTACTCTCT
TTCTGCCTACAGGAGTTAGC

Downstream 100 bases:

>100_bases
AGGAGACAATCATGTTGGATTATGAAACGTTGCGGTTCATTTGGTGGCTGCTGATCGGCGTTATCCTGGTGGCATTTATG
GTAACTGACGGGTTTGATAT

Product: cytochrome D ubiquinol oxidase subunit I

Products: ubiquinone-8; H2O [C]

Alternate protein names: Cytochrome bd-II oxidase subunit I [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAVMETIYVVTGKTVYRDMTRFWGKLFGINFALGVATGLTMEFQFGTN
WSLYSNYVGDIFGAPLAMEALLAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQHPTGAHFN
IDTLRMEMSSFSDLVFNPVSQVKFVHTVMSGYVTGAMFIMSISAWYLLRGREREVALRSFAIGSVFGTLAILGTLQLGDS
SAYEVAQIQPVKLAAMEGEWQTEPAPAPFHLIAWPQQEQERNAFAVKIPALLGILATHSLDTPVPGLKNLMDDTLPRLKR
GREAWLLMQEIAQGNRSPQVLNAFHAVEGDLGYGILLAKYAPDMNHVTPEQYRAAQRGAIPQVAPVFWSFRIMVGCGSLL
LVVMLIALIQTLRMRIDQHRWVLRMTLWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTWYAHSALTPGQLAFSMGLILG
LYTLFLIAEVYLMQKYARLGPSAMQHQQQAQQQG

Sequences:

>Translated_514_residues
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAVMETIYVVTGKTVYRDMTRFWGKLFGINFALGVATGLTMEFQFGTN
WSLYSNYVGDIFGAPLAMEALLAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQHPTGAHFN
IDTLRMEMSSFSDLVFNPVSQVKFVHTVMSGYVTGAMFIMSISAWYLLRGREREVALRSFAIGSVFGTLAILGTLQLGDS
SAYEVAQIQPVKLAAMEGEWQTEPAPAPFHLIAWPQQEQERNAFAVKIPALLGILATHSLDTPVPGLKNLMDDTLPRLKR
GREAWLLMQEIAQGNRSPQVLNAFHAVEGDLGYGILLAKYAPDMNHVTPEQYRAAQRGAIPQVAPVFWSFRIMVGCGSLL
LVVMLIALIQTLRMRIDQHRWVLRMTLWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTWYAHSALTPGQLAFSMGLILG
LYTLFLIAEVYLMQKYARLGPSAMQHQQQAQQQG
>Mature_514_residues
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAVMETIYVVTGKTVYRDMTRFWGKLFGINFALGVATGLTMEFQFGTN
WSLYSNYVGDIFGAPLAMEALLAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQHPTGAHFN
IDTLRMEMSSFSDLVFNPVSQVKFVHTVMSGYVTGAMFIMSISAWYLLRGREREVALRSFAIGSVFGTLAILGTLQLGDS
SAYEVAQIQPVKLAAMEGEWQTEPAPAPFHLIAWPQQEQERNAFAVKIPALLGILATHSLDTPVPGLKNLMDDTLPRLKR
GREAWLLMQEIAQGNRSPQVLNAFHAVEGDLGYGILLAKYAPDMNHVTPEQYRAAQRGAIPQVAPVFWSFRIMVGCGSLL
LVVMLIALIQTLRMRIDQHRWVLRMTLWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTWYAHSALTPGQLAFSMGLILG
LYTLFLIAEVYLMQKYARLGPSAMQHQQQAQQQG

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=514, Percent_Identity=89.1050583657588, Blast_Score=934, Evalue=0.0,
Organism=Escherichia coli, GI87081779, Length=505, Percent_Identity=61.7821782178218, Blast_Score=669, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 58035; Mature: 58035

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAVMETIYVVTGKTVYRDMTRFWGKLFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
INFALGVATGLTMEFQFGTNWSLYSNYVGDIFGAPLAMEALLAFFLESTFVGLFFFGWQR
HHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LNKYQHLLVTWLVAFGSNISALWILNANGWMQHPTGAHFNIDTLRMEMSSFSDLVFNPVS
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH
QVKFVHTVMSGYVTGAMFIMSISAWYLLRGREREVALRSFAIGSVFGTLAILGTLQLGDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SAYEVAQIQPVKLAAMEGEWQTEPAPAPFHLIAWPQQEQERNAFAVKIPALLGILATHSL
CCCCHHEECCEEEEEECCCCCCCCCCCCEEEEECCCCHHCCCCEEEEHHHHHHHHHHCCC
DTPVPGLKNLMDDTLPRLKRGREAWLLMQEIAQGNRSPQVLNAFHAVEGDLGYGILLAKY
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEC
APDMNHVTPEQYRAAQRGAIPQVAPVFWSFRIMVGCGSLLLVVMLIALIQTLRMRIDQHR
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVLRMTLWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTWYAHSALTPGQLAFSMGLILG
HHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LYTLFLIAEVYLMQKYARLGPSAMQHQQQAQQQG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAVMETIYVVTGKTVYRDMTRFWGKLFG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
INFALGVATGLTMEFQFGTNWSLYSNYVGDIFGAPLAMEALLAFFLESTFVGLFFFGWQR
HHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LNKYQHLLVTWLVAFGSNISALWILNANGWMQHPTGAHFNIDTLRMEMSSFSDLVFNPVS
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH
QVKFVHTVMSGYVTGAMFIMSISAWYLLRGREREVALRSFAIGSVFGTLAILGTLQLGDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SAYEVAQIQPVKLAAMEGEWQTEPAPAPFHLIAWPQQEQERNAFAVKIPALLGILATHSL
CCCCHHEECCEEEEEECCCCCCCCCCCCEEEEECCCCHHCCCCEEEEHHHHHHHHHHCCC
DTPVPGLKNLMDDTLPRLKRGREAWLLMQEIAQGNRSPQVLNAFHAVEGDLGYGILLAKY
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEC
APDMNHVTPEQYRAAQRGAIPQVAPVFWSFRIMVGCGSLLLVVMLIALIQTLRMRIDQHR
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVLRMTLWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTWYAHSALTPGQLAFSMGLILG
HHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LYTLFLIAEVYLMQKYARLGPSAMQHQQQAQQQG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ubiquinol-8; O2 [C]

Specific reaction: ubiquinol-8 + O2 = ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]