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The map label for this gene is virB9 [H]

Identifier: 190571632

GI number: 190571632

Start: 1328696

End: 1329490

Strand: Direct

Name: virB9 [H]

Synonym: WPa_1256

Alternate gene names: 190571632

Gene position: 1328696-1329490 (Clockwise)

Preceding gene: 190571631

Following gene: 190571633

Centisome position: 89.63

GC content: 29.06

Gene sequence:

>795_bases
ATGATGAATATGTGTAGGATATTGTTAGTTTTAGCTTTACTAATAAGTGGCAACTTAAATGCATCTATTAATAATAAACC
TATTTCTGTAGATAGTAGAATAAAGACTTTTGTATATAGCCCTAATGAGGTGTTTACAGTAATTTTTAGTCAAGGTTACT
ATTCTTATATTGAGTTTGCAGAAGGGGAAAAAGTCAAAAATATTGCTGTTGGTGATGCATCAAGTTGGAAAATTAATCCT
TATGATAATAAACTGCTTGTCATGCCATTTGAAGTCAGTAGTCGCACTAACATGATTATTACGACAACTAAAAAGAGAAA
TTACATTTTTGATCTAATTTCAAGACCAAATTACGATAAATACCCAGATACTGATGCTAAAAAAGTGGATCATGATTATT
CCGTTGAAAAGGATATATCTTACGTAATACGTTTTTATTATCCTCAAGAAGAAGATGAATTTGATGTTGATTTAGATGAG
GTTTCTTTACCTACTCAAATGCAATACATTACAGAAAAGCCAGAAAAAATAATACAAGAAAATAATACGAGGTACAACTA
TACATATATTGATGAAGGTGGTAACATAGATATAGTTCCAATTGAGTTATTCGATGATGGTTATTTAACCTATTTAAAGT
TTAGAAATAGTAATAAAATTCCTCAGATTTTTATAGAAGGCGAATCCTGTAAAAGGCTGTTATTTGATGATTATGTTGTA
ATAAAAGGAGTACATAAAAAGCTATTAATGCGTTATGAAGGTAGTGAAGTTGAAGTTATAAATAGGTCACTTTAG

Upstream 100 bases:

>100_bases
AAGATAGTTGTGATGTCGTATAAATATGCATCGCTTGAAATGAATGATCAGCAAAGATATATTAACCCGTTAGGGTTTCA
AGTTATTTCATATAGAGTAG

Downstream 100 bases:

>100_bases
TTCTGGTACATATAATATGAGTAAAGAAAGGCATAATAGTGTAGAAGATGAATCAGAGATAGAAAGCAAGGTAGTAACAG
TTGGCTCTAATCAAGGTTAT

Product: type IV secretion system protein VirB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MMNMCRILLVLALLISGNLNASINNKPISVDSRIKTFVYSPNEVFTVIFSQGYYSYIEFAEGEKVKNIAVGDASSWKINP
YDNKLLVMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYPDTDAKKVDHDYSVEKDISYVIRFYYPQEEDEFDVDLDE
VSLPTQMQYITEKPEKIIQENNTRYNYTYIDEGGNIDIVPIELFDDGYLTYLKFRNSNKIPQIFIEGESCKRLLFDDYVV
IKGVHKKLLMRYEGSEVEVINRSL

Sequences:

>Translated_264_residues
MMNMCRILLVLALLISGNLNASINNKPISVDSRIKTFVYSPNEVFTVIFSQGYYSYIEFAEGEKVKNIAVGDASSWKINP
YDNKLLVMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYPDTDAKKVDHDYSVEKDISYVIRFYYPQEEDEFDVDLDE
VSLPTQMQYITEKPEKIIQENNTRYNYTYIDEGGNIDIVPIELFDDGYLTYLKFRNSNKIPQIFIEGESCKRLLFDDYVV
IKGVHKKLLMRYEGSEVEVINRSL
>Mature_264_residues
MMNMCRILLVLALLISGNLNASINNKPISVDSRIKTFVYSPNEVFTVIFSQGYYSYIEFAEGEKVKNIAVGDASSWKINP
YDNKLLVMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYPDTDAKKVDHDYSVEKDISYVIRFYYPQEEDEFDVDLDE
VSLPTQMQYITEKPEKIIQENNTRYNYTYIDEGGNIDIVPIELFDDGYLTYLKFRNSNKIPQIFIEGESCKRLLFDDYVV
IKGVHKKLLMRYEGSEVEVINRSL

Specific function: Is essential for the biogenesis of the T-pilus, which is required for virulence and T-DNA transfer to plant cells. When is associated with virB7, might function as a nucleation center for recruitment of virB proteins during assembly of the T-DNA transfer

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 30857; Mature: 30857

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNMCRILLVLALLISGNLNASINNKPISVDSRIKTFVYSPNEVFTVIFSQGYYSYIEFA
CCHHHHHHHHHHHHHCCCCCCEECCCCEEECCCEEEEEECCCEEEEEEECCCCEEEEEEC
EGEKVKNIAVGDASSWKINPYDNKLLVMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDK
CCCCEEEEEECCCCCEEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCC
YPDTDAKKVDHDYSVEKDISYVIRFYYPQEEDEFDVDLDEVSLPTQMQYITEKPEKIIQE
CCCCCHHHCCCCCCCHHCCEEEEEEECCCCCCCCCCCHHHCCCCHHHHHHHCCHHHHHHC
NNTRYNYTYIDEGGNIDIVPIELFDDGYLTYLKFRNSNKIPQIFIEGESCKRLLFDDYVV
CCCEEEEEEEECCCCEEEEEEEEECCCEEEEEEEECCCCCCEEEEECCHHCCHHHCCEEE
IKGVHKKLLMRYEGSEVEVINRSL
EEHHHHHHHEEECCCEEEEEECCC
>Mature Secondary Structure
MMNMCRILLVLALLISGNLNASINNKPISVDSRIKTFVYSPNEVFTVIFSQGYYSYIEFA
CCHHHHHHHHHHHHHCCCCCCEECCCCEEECCCEEEEEECCCEEEEEEECCCCEEEEEEC
EGEKVKNIAVGDASSWKINPYDNKLLVMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDK
CCCCEEEEEECCCCCEEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCC
YPDTDAKKVDHDYSVEKDISYVIRFYYPQEEDEFDVDLDEVSLPTQMQYITEKPEKIIQE
CCCCCHHHCCCCCCCHHCCEEEEEEECCCCCCCCCCCHHHCCCCHHHHHHHCCHHHHHHC
NNTRYNYTYIDEGGNIDIVPIELFDDGYLTYLKFRNSNKIPQIFIEGESCKRLLFDDYVV
CCCEEEEEEEECCCCEEEEEEEEECCCEEEEEEEECCCCCCEEEEECCHHCCHHHCCEEE
IKGVHKKLLMRYEGSEVEVINRSL
EEHHHHHHHEEECCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2837739 [H]