Click here to switch to the map view.

The map label for this gene is 190571631

Identifier: 190571631

GI number: 190571631

Start: 1328032

End: 1328712

Strand: Direct

Name: 190571631

Synonym: WPa_1255

Alternate gene names: NA

Gene position: 1328032-1328712 (Clockwise)

Preceding gene: 190571630

Following gene: 190571632

Centisome position: 89.58

GC content: 28.93

Gene sequence:

>681_bases
ATGCTGAAATTTTTAAAACAAGAAAAAAGTAATGAGTCATTGGATAAGGATATAAATTGGAATTCAAGTCGCTATAGCAC
AGTTGTTGCTCAGAGAAATACTTTACTTTTATTTACATTAATATTACTAGTTGCAATTTCTATAAGCATATTAGCTATAT
TTAAAATTAGCACAAGTAGCACTATTGAGCCATTCGTTATAGAAATTGACAAAAAGTCAGGCATAGTGCAATTGGTTGAT
CCTGTTACAGTAAAACAATATTCTGCAAATGAAACGCTGAACGATTATTTTATTTCAGAGTATATAAAAGCAAGGGAGGT
TTTTGACCCATATAATTATAATTATAATTATTATACAAAAGTAAGGTTGTTTTCTTCGCCTAGTGTATATAGTGAATTTA
GCAACTATATAAAATCGCAGAATATGAATGACCTTTTTAATTTATATTCAGATGCTAAAGGTGAGTTGAAAATTCGTTCA
ATTCAAAAATTAGGTAATGATGCTCTTCAAGTGAGATTTTCTATAGAATTTACACGAAAAGATGGAAATTCCTCAAGGAA
AAATAAGATAGTTGTGATGTCGTATAAATATGCATCGCTTGAAATGAATGATCAGCAAAGATATATTAACCCGTTAGGGT
TTCAAGTTATTTCATATAGAGTAGATGATGAATATGTGTAG

Upstream 100 bases:

>100_bases
GTTAGGCCATGGATTAAGGGTTTATTAGCTTTTTTGTTATAACTACTTTGTTAGCTTGCTATGTTAATTAATATAAGTTA
AGATTTTTAAGAATATTGAG

Downstream 100 bases:

>100_bases
GATATTGTTAGTTTTAGCTTTACTAATAAGTGGCAACTTAAATGCATCTATTAATAATAAACCTATTTCTGTAGATAGTA
GAATAAAGACTTTTGTATAT

Product: type IV secretion system protein VirB8

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MLKFLKQEKSNESLDKDINWNSSRYSTVVAQRNTLLLFTLILLVAISISILAIFKISTSSTIEPFVIEIDKKSGIVQLVD
PVTVKQYSANETLNDYFISEYIKAREVFDPYNYNYNYYTKVRLFSSPSVYSEFSNYIKSQNMNDLFNLYSDAKGELKIRS
IQKLGNDALQVRFSIEFTRKDGNSSRKNKIVVMSYKYASLEMNDQQRYINPLGFQVISYRVDDEYV

Sequences:

>Translated_226_residues
MLKFLKQEKSNESLDKDINWNSSRYSTVVAQRNTLLLFTLILLVAISISILAIFKISTSSTIEPFVIEIDKKSGIVQLVD
PVTVKQYSANETLNDYFISEYIKAREVFDPYNYNYNYYTKVRLFSSPSVYSEFSNYIKSQNMNDLFNLYSDAKGELKIRS
IQKLGNDALQVRFSIEFTRKDGNSSRKNKIVVMSYKYASLEMNDQQRYINPLGFQVISYRVDDEYV
>Mature_226_residues
MLKFLKQEKSNESLDKDINWNSSRYSTVVAQRNTLLLFTLILLVAISISILAIFKISTSSTIEPFVIEIDKKSGIVQLVD
PVTVKQYSANETLNDYFISEYIKAREVFDPYNYNYNYYTKVRLFSSPSVYSEFSNYIKSQNMNDLFNLYSDAKGELKIRS
IQKLGNDALQVRFSIEFTRKDGNSSRKNKIVVMSYKYASLEMNDQQRYINPLGFQVISYRVDDEYV

Specific function: Unknown

COG id: COG3736

COG function: function code U; Type IV secretory pathway, component VirB8

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26331; Mature: 26331

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFLKQEKSNESLDKDINWNSSRYSTVVAQRNTLLLFTLILLVAISISILAIFKISTSS
CCCHHHHCCCCCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHEEEECCCC
TIEPFVIEIDKKSGIVQLVDPVTVKQYSANETLNDYFISEYIKAREVFDPYNYNYNYYTK
CCCEEEEEEECCCCEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE
VRLFSSPSVYSEFSNYIKSQNMNDLFNLYSDAKGELKIRSIQKLGNDALQVRFSIEFTRK
EEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEHHHHHCCCCEEEEEEEEEEEEC
DGNSSRKNKIVVMSYKYASLEMNDQQRYINPLGFQVISYRVDDEYV
CCCCCCCCEEEEEEEEEEEEEECCHHHHCCCCCEEEEEEEECCCCC
>Mature Secondary Structure
MLKFLKQEKSNESLDKDINWNSSRYSTVVAQRNTLLLFTLILLVAISISILAIFKISTSS
CCCHHHHCCCCCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHEEEECCCC
TIEPFVIEIDKKSGIVQLVDPVTVKQYSANETLNDYFISEYIKAREVFDPYNYNYNYYTK
CCCEEEEEEECCCCEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE
VRLFSSPSVYSEFSNYIKSQNMNDLFNLYSDAKGELKIRSIQKLGNDALQVRFSIEFTRK
EEEECCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEHHHHHCCCCEEEEEEEEEEEEC
DGNSSRKNKIVVMSYKYASLEMNDQQRYINPLGFQVISYRVDDEYV
CCCCCCCCEEEEEEEEEEEEEECCHHHHCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]