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The map label for this gene is xerC [H]

Identifier: 189184773

GI number: 189184773

Start: 1899843

End: 1900781

Strand: Reverse

Name: xerC [H]

Synonym: OTT_1866

Alternate gene names: 189184773

Gene position: 1900781-1899843 (Counterclockwise)

Preceding gene: 189184774

Following gene: 189184772

Centisome position: 94.61

GC content: 28.97

Gene sequence:

>939_bases
ATGCAACTTAATTCTCAACTTGAAAAAATTATAACTGAGTGGCTTAACTATCTTAAAAACTATAAAAATTATTCAATTAA
TACATGTAGTTCTTACAATAATGACTTACAGCAGTTTCTTAATTTTATAGTTGATTATTGTAATTTAAGTGAGTTAAAGA
TTAGCCACCTTTGTTCAGTTGATATAAGATTAATGAGAAGTTGGTTAAGCCAGAGATATAACCTTCAATATAATTCTAGT
TCAAATAGTAGAGCATTATCTAGTGTTAGAAATTTTTACAAGTATTTATTTAAGCACCATAATTTAGTTAATAAGATTAT
ATGTGCAGTTAGAAGCCCTAAATTAGCTAAACGGTTACCTAAAGCTCTTGATATTCAGGATACAGTAGCTTGTACTACTG
AAATTAATAATATAGCAAATGATAAATGGATAGGGGCAAGAGATAAAGCTTTGCTGCTTTTATTATATGGTCAAGGATTA
CGTATTTCTGAAGCTTTATCTGTAACTAAAGCTAGTTTAAAATCAGAATCATTGATAATTAAAGGTAAAGGCAATAAAAT
AAGGCTAATCCCATGGCTTGATATTACTAAGCAACTACTATCAGATTACGTAAATCTTGTACCATATTCACTAACAGATA
ACTCTCCATTATTTGTTGGAAAAAGAGGGAAAAAACTGCAGCCAGCAGTTTTTGGTCGACATTTAATTAAATTACGGCGT
CAATTAAACTTACCAGAATCATTAACAGCTCATACTTTTCGGCATTGTTTTGCTAGTCACTTGCTTAATAACGGTGCTGA
TTTACGCTCTATACAGGAATTATTAGGTCATCAAAGTTTATCATCAACACAAATATATACAAAAATTAATTCTGATTTTT
TAACTTCAGTGTATAATAAATCACACCCATTAGTTAGAGAACAAAATAATAAAACTTAA

Upstream 100 bases:

>100_bases
GAGCATATTACTGGAAAGATTAAAATAGATGATATTTTAGCAGAAATTTTTGCTAGCTTCTGTATAGGTAAATAAGTTTA
ATTATATTAATATTTGTATT

Downstream 100 bases:

>100_bases
TTAAGTGGTTAATTAAAAAATAATATAGTGCATTATGAGTAAAATAATATTACCTAAAGGATATAAACCTTCTGAAGAAG
AAGAGTATATGAGTCCAAAC

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MQLNSQLEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDIRLMRSWLSQRYNLQYNSS
SNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKALDIQDTVACTTEINNIANDKWIGARDKALLLLLYGQGL
RISEALSVTKASLKSESLIIKGKGNKIRLIPWLDITKQLLSDYVNLVPYSLTDNSPLFVGKRGKKLQPAVFGRHLIKLRR
QLNLPESLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVREQNNKT

Sequences:

>Translated_312_residues
MQLNSQLEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDIRLMRSWLSQRYNLQYNSS
SNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKALDIQDTVACTTEINNIANDKWIGARDKALLLLLYGQGL
RISEALSVTKASLKSESLIIKGKGNKIRLIPWLDITKQLLSDYVNLVPYSLTDNSPLFVGKRGKKLQPAVFGRHLIKLRR
QLNLPESLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVREQNNKT
>Mature_312_residues
MQLNSQLEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDIRLMRSWLSQRYNLQYNSS
SNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKALDIQDTVACTTEINNIANDKWIGARDKALLLLLYGQGL
RISEALSVTKASLKSESLIIKGKGNKIRLIPWLDITKQLLSDYVNLVPYSLTDNSPLFVGKRGKKLQPAVFGRHLIKLRR
QLNLPESLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVREQNNKT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=300, Percent_Identity=34, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1790244, Length=301, Percent_Identity=28.5714285714286, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35849; Mature: 35849

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNSQLEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSV
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
DIRLMRSWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLP
HHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
KALDIQDTVACTTEINNIANDKWIGARDKALLLLLYGQGLRISEALSVTKASLKSESLII
HHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEE
KGKGNKIRLIPWLDITKQLLSDYVNLVPYSLTDNSPLFVGKRGKKLQPAVFGRHLIKLRR
EECCCEEEEEEHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCHHHHHHHHHHHHH
QLNLPESLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNK
HCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHEEHHCHHHHHHHHCC
SHPLVREQNNKT
CCCCCCCCCCCC
>Mature Secondary Structure
MQLNSQLEKIITEWLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSV
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
DIRLMRSWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLP
HHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
KALDIQDTVACTTEINNIANDKWIGARDKALLLLLYGQGLRISEALSVTKASLKSESLII
HHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEE
KGKGNKIRLIPWLDITKQLLSDYVNLVPYSLTDNSPLFVGKRGKKLQPAVFGRHLIKLRR
EECCCEEEEEEHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCHHHHHHHHHHHHH
QLNLPESLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNK
HCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHEEHHCHHHHHHHHCC
SHPLVREQNNKT
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]