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The map label for this gene is jag [H]

Identifier: 189026171

GI number: 189026171

Start: 1030638

End: 1031333

Strand: Reverse

Name: jag [H]

Synonym: TPASS_0948

Alternate gene names: 189026171

Gene position: 1031333-1030638 (Counterclockwise)

Preceding gene: 189026172

Following gene: 189026170

Centisome position: 90.51

GC content: 51.44

Gene sequence:

>696_bases
ATGGTGTATGAGTTTGAAGGCAAGACAGAACAGGACGCCATTGCGCGTGCCGCTGCAGAGCTGGGATTGGGAGTAGATCA
GTTTGATGTGGAGATACTGGAGATACAAAAATCCTCTCTTTTCAAGAAGGGTTTTGCGCGTATTCGTGTGCATGTAGCGG
CGGTCACCGCCTCGCCGGGTCATGCGGCGCATGCGCAGTACGATCCGGTTTCTGTGTTGAGTGAGCAGCAGTTTGCAGAT
CTTGGGGCGCAGCTGCGTGCTTTTTTATCTCATGTATTCCACGCAATGGGCTACGCGGTGACAATCGATGCCTTCGTACG
GGAGTCAGATCGGGTGGTGGTTAGATTGCACTCAAGCCATTCTGCAATTTTGATTGGAAAGAAGGGGAAGAACCTCGATG
CGTTGCAACTATTAGCGAATGTATTTTTTACCAAAATTGGTGCTAAAGGGGTGAAGGTTGTGCTTGACTGTGAGAATTAC
CGCATCCGACGGGAAGAAATGCTCATCCGCATGGCATATGCTACTGCAGATCAGGTAAGTGCGAGCAAGCGATCGGTGTT
GCTGGAGCCAATGAATCCCTATGAGCGGAGGCTTATTCATACAACGCTGCATGGGATCAGTGGGGTAGAGACCAGAAGTG
AGGGGGAAGGGCTTTACAAGCAGGTGCGGGTGTGTCACACCGGGGGTGCGATATGA

Upstream 100 bases:

>100_bases
TCTAGTGTATTGGACGGCAATGAACGGAGTGACGCTTGTACAGCAGTTGGTGATGAAGCGTACGGCTAACAAGAATAAAA
CCTGATGCAGGAGTCGGTGT

Downstream 100 bases:

>100_bases
ATACGCAGGTGTGGCGCGTCTGTGTGGGGGTGATGTTGTTCTGCTTCGTTGGCAGGATCGGGTGTGCGGAGGAAAAAATG
GTACGCGAGGAAGGGTTGGC

Product: spoIIIJ-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MVYEFEGKTEQDAIARAAAELGLGVDQFDVEILEIQKSSLFKKGFARIRVHVAAVTASPGHAAHAQYDPVSVLSEQQFAD
LGAQLRAFLSHVFHAMGYAVTIDAFVRESDRVVVRLHSSHSAILIGKKGKNLDALQLLANVFFTKIGAKGVKVVLDCENY
RIRREEMLIRMAYATADQVSASKRSVLLEPMNPYERRLIHTTLHGISGVETRSEGEGLYKQVRVCHTGGAI

Sequences:

>Translated_231_residues
MVYEFEGKTEQDAIARAAAELGLGVDQFDVEILEIQKSSLFKKGFARIRVHVAAVTASPGHAAHAQYDPVSVLSEQQFAD
LGAQLRAFLSHVFHAMGYAVTIDAFVRESDRVVVRLHSSHSAILIGKKGKNLDALQLLANVFFTKIGAKGVKVVLDCENY
RIRREEMLIRMAYATADQVSASKRSVLLEPMNPYERRLIHTTLHGISGVETRSEGEGLYKQVRVCHTGGAI
>Mature_231_residues
MVYEFEGKTEQDAIARAAAELGLGVDQFDVEILEIQKSSLFKKGFARIRVHVAAVTASPGHAAHAQYDPVSVLSEQQFAD
LGAQLRAFLSHVFHAMGYAVTIDAFVRESDRVVVRLHSSHSAILIGKKGKNLDALQLLANVFFTKIGAKGVKVVLDCENY
RIRREEMLIRMAYATADQVSASKRSVLLEPMNPYERRLIHTTLHGISGVETRSEGEGLYKQVRVCHTGGAI

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 25479; Mature: 25479

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYEFEGKTEQDAIARAAAELGLGVDQFDVEILEIQKSSLFKKGFARIRVHVAAVTASPG
CEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHEEHHHHHHHHHHHHEEEEEEEEEECCCC
HAAHAQYDPVSVLSEQQFADLGAQLRAFLSHVFHAMGYAVTIDAFVRESDRVVVRLHSSH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEHHHHCCCCEEEEEEECCC
SAILIGKKGKNLDALQLLANVFFTKIGAKGVKVVLDCENYRIRREEMLIRMAYATADQVS
CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
ASKRSVLLEPMNPYERRLIHTTLHGISGVETRSEGEGLYKQVRVCHTGGAI
CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVYEFEGKTEQDAIARAAAELGLGVDQFDVEILEIQKSSLFKKGFARIRVHVAAVTASPG
CEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHEEHHHHHHHHHHHHEEEEEEEEEECCCC
HAAHAQYDPVSVLSEQQFADLGAQLRAFLSHVFHAMGYAVTIDAFVRESDRVVVRLHSSH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEHHHHCCCCEEEEEEECCC
SAILIGKKGKNLDALQLLANVFFTKIGAKGVKVVLDCENYRIRREEMLIRMAYATADQVS
CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
ASKRSVLLEPMNPYERRLIHTTLHGISGVETRSEGEGLYKQVRVCHTGGAI
CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]