Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
---|---|
Accession | NC_010741 |
Length | 1,139,457 |
Click here to switch to the map view.
The map label for this gene is 189026107
Identifier: 189026107
GI number: 189026107
Start: 962832
End: 963920
Strand: Reverse
Name: 189026107
Synonym: TPASS_0884
Alternate gene names: NA
Gene position: 963920-962832 (Counterclockwise)
Preceding gene: 189026108
Following gene: 189026106
Centisome position: 84.59
GC content: 45.09
Gene sequence:
>1089_bases GTGTACGTGTGCGAGGTAGTGTTCAAACACATCCTGGTGGGCGTGCTGTGCTTTTTCTTGGTTTTTTTTGTGAACAACGT ACTGCTTTTTGCGCAGACATTACTTACCAAGCACGTGAGCGCTGCGGACGTGGTCCGGCTGTTGCTGTATTCCATTCCCG CTGCGTTGATTTACGTTACTCCTTTTGCCGTGTTGGTCGGTTCCCTCTTGGGGTTGGGGCGGCTGCGTAACAACCTTGAA CTGCTTGCGCTGCAAGTGCTGGGCGTTTCGCCGCGGTTTTTGATATTCCCTCTTTTGTCGATTGGTTTGTGCAGTGCGCT TTTTGTATTTGTTTTTAGCGACGTGGTGGTACCTGCAAGCTTTATACGATTAAGGCAGGTGTATTGGCGCGTACTCAGTT CCGTGCCATCCTTGGGATTTGAATCTCACACAACTAGAAAACACAATGGGGTTATACTGTCGGTTGGTGAAGTATTTCAC TCCGTTATGTATCAACTTTTAATTGTCGACAAAAGCGATTCCCGTAGTTTGAAGGTTGTGAGTAGTAGAAAGTCCGTACT CGAATCGAGCGCAGATCAAACTGTACCGTTTACGATACGAATGCATGATCCTTGTATGCTCATTGTATATCGCACCCGCC CCCGTATTTGCGATCTCATTTACGGTGGAAGAGCTGACTATCACGTGCATACGCAGCAAACACAACCAGAGTATTTTATG GGATTGGGGCCGGGTGGCTTTTCGACCTGTAGTTTATACCGGGAGATACAGGAAAAAATAAAAGCAAAGGAAAACCCGAG ACATATCGCGACGTACCAATTGGAATTCCAAAAAAAATTTTCTCACCCGATAAGCGTAGTGCTTTTTATTTTTTTGTCTT TTGGTTTGAGTACACTTAGCAATATTTCTTCCCAGGGGAAAGGATTTGTAGGAGGGCTTATTGTTGTACTAGGGTATTGG ATTATCTCTATCGGAGGACAAGAACTTGCGTTGAGGCTTAGTATTGTTCCTTCCCTTGCACTGTGGATTCCAAACGCCGC ATTGTTTTTTACTGCATTGATTTTGTCAATGAGAAAATCTGCAGTATGA
Upstream 100 bases:
>100_bases ATGTGCGCTCCGGTAGTATCTCGCTGACTGAACGGGGAAAAGGAGGGTACGGATCCACAGGGGTTCTGTAGTTACCTAGA TGTGGAGAAGAGTGCTTTTT
Downstream 100 bases:
>100_bases AAATACTGCAGGTGTATATGTTGGACATGTTCTTACCAATTTTTTTTCTAGTGCTCGTGTGTGCGAGTATGATTCTCGAT GCTATTGATATTCTGGTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 362; Mature: 362
Protein sequence:
>362_residues MYVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVTPFAVLVGSLLGLGRLRNNLE LLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPASFIRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFH SVMYQLLIVDKSDSRSLKVVSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYFM GLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLSTLSNISSQGKGFVGGLIVVLGYW IISIGGQELALRLSIVPSLALWIPNAALFFTALILSMRKSAV
Sequences:
>Translated_362_residues MYVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVTPFAVLVGSLLGLGRLRNNLE LLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPASFIRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFH SVMYQLLIVDKSDSRSLKVVSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYFM GLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLSTLSNISSQGKGFVGGLIVVLGYW IISIGGQELALRLSIVPSLALWIPNAALFFTALILSMRKSAV >Mature_362_residues MYVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVTPFAVLVGSLLGLGRLRNNLE LLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPASFIRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFH SVMYQLLIVDKSDSRSLKVVSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYFM GLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLSTLSNISSQGKGFVGGLIVVLGYW IISIGGQELALRLSIVPSLALWIPNAALFFTALILSMRKSAV
Specific function: Unknown
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40352; Mature: 40352
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: PS01258 BH2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH PFAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPAS HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FIRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFHSVMYQLLIVDKSDSRSLKVV HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHEECCCCCCCHHHH SSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYFM HHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHCCCCCCEEEECCCCCCCCEE GLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLSTLS EECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHH NISSQGKGFVGGLIVVLGYWIISIGGQELALRLSIVPSLALWIPNAALFFTALILSMRKS HHHHCCCCHHHHHHHHHHHHHHHCCCHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH AV CC >Mature Secondary Structure MYVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH PFAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPAS HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FIRLRQVYWRVLSSVPSLGFESHTTRKHNGVILSVGEVFHSVMYQLLIVDKSDSRSLKVV HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHEECCCCCCCHHHH SSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYFM HHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHCCCCCCEEEECCCCCCCCEE GLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLSTLS EECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHH NISSQGKGFVGGLIVVLGYWIISIGGQELALRLSIVPSLALWIPNAALFFTALILSMRKS HHHHCCCCHHHHHHHHHHHHHHHCCCHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH AV CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA