| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527505
Identifier: 188527505
GI number: 188527505
Start: 697281
End: 697688
Strand: Reverse
Name: 188527505
Synonym: HPSH_03625
Alternate gene names: NA
Gene position: 697688-697281 (Counterclockwise)
Preceding gene: 188527506
Following gene: 188527504
Centisome position: 43.37
GC content: 37.25
Gene sequence:
>408_bases ATGGGCAATTTAGCGTATTATGCTTACATGTATTTGATCCTCTTTATATGCTTGCTGCCTGTGTTATTGGTGGGGCTTGC TTGGAGGCTTTCTCGCCCCCCCTTAAAGCAAAATATCCCTAATAAAAACCTCTCTTTAGAATATTTGAGCGAACAAGTTA AAAACCTTAAAAGCGCACCAACTTTAGAAAAACTTAAAAACAGCTTCAATGAGCGTTTTAAAATTTGCCCTAAAGATAAA GAAACTCTGTGGCTAGAAACGATCCAAAATTTAGTCGCTTCAGAATTTTTTGAATTAGAAGACGCTATCAATTTTGGGCA GGATTTAGAAAACGCTAACCCCAGTCATGCGCAAAAAATCGCTAACGCTACCGGCTTAGCCATTAAGAATAAAAAAGAAA AAGGATAG
Upstream 100 bases:
>100_bases CTTACCAATTCAAGGGCAAACGATACGATTGCGGGAGCGTGGAAGGCTATATTGAAGCGAGTAACGCTTATTATAAAAAA CGCTTGTAAATCTTATCAAC
Downstream 100 bases:
>100_bases AATTGGATTTTTTAGAGATTGTAGGACAAGTCCCTTTAAAAGGGGGGGTAGAAATTTCAGGGGCGAAAAACTCCGCGCTC CCCATTTTAGCCGCCACGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MGNLAYYAYMYLILFICLLPVLLVGLAWRLSRPPLKQNIPNKNLSLEYLSEQVKNLKSAPTLEKLKNSFNERFKICPKDK ETLWLETIQNLVASEFFELEDAINFGQDLENANPSHAQKIANATGLAIKNKKEKG
Sequences:
>Translated_135_residues MGNLAYYAYMYLILFICLLPVLLVGLAWRLSRPPLKQNIPNKNLSLEYLSEQVKNLKSAPTLEKLKNSFNERFKICPKDK ETLWLETIQNLVASEFFELEDAINFGQDLENANPSHAQKIANATGLAIKNKKEKG >Mature_134_residues GNLAYYAYMYLILFICLLPVLLVGLAWRLSRPPLKQNIPNKNLSLEYLSEQVKNLKSAPTLEKLKNSFNERFKICPKDKE TLWLETIQNLVASEFFELEDAINFGQDLENANPSHAQKIANATGLAIKNKKEKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15400; Mature: 15269
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNLAYYAYMYLILFICLLPVLLVGLAWRLSRPPLKQNIPNKNLSLEYLSEQVKNLKSAP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCC TLEKLKNSFNERFKICPKDKETLWLETIQNLVASEFFELEDAINFGQDLENANPSHAQKI HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH ANATGLAIKNKKEKG HHHHHHHHCCCCCCC >Mature Secondary Structure GNLAYYAYMYLILFICLLPVLLVGLAWRLSRPPLKQNIPNKNLSLEYLSEQVKNLKSAP CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCC TLEKLKNSFNERFKICPKDKETLWLETIQNLVASEFFELEDAINFGQDLENANPSHAQKI HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH ANATGLAIKNKKEKG HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA