| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527454
Identifier: 188527454
GI number: 188527454
Start: 639026
End: 640039
Strand: Reverse
Name: 188527454
Synonym: HPSH_03360
Alternate gene names: NA
Gene position: 640039-639026 (Counterclockwise)
Preceding gene: 188527455
Following gene: 188527453
Centisome position: 39.79
GC content: 36.79
Gene sequence:
>1014_bases ATGTCTTGGATGGTGGTTATCGGGGCTTTAATTTGCGTGCTTTTAGGGGTGTTTATCTTCTTTACTAGCATGTCGGTTAA AAAATCTTTAACCGCTTATCTTAACGCTTATTTAGATCAACGCCCTAAGATTAAGGGCGTGGGGATTGTAGGCACTCCTT TTGAATGCGAGGGGTTTTTTAAAATTGCATGCGTTTCTAAAGAGATCAGTTTTTTAGATTCTCAAAACTCCCCTATTATG GATTTTAAAAATTTGAGTATTAAGCTCAATTCTTTAGATAAGAGCTCTCTTGTCCTTTCTGTCCATTCTCAAATCAAATC CCCTATTTTAGAACAATCCATTCAGCAAAAAATCCATCAAATCCCCCTAAAAGACTTGAATGCCTTATTGGAAAAAATTA AACCCACGCGCTTGAATTGCTCTTTAAAATTCAACGCTTTAGATGAAAAAACCTTAAACGACCATTTAAAATGCGATTTG ACTAATACAGAGAATATCCTTGCTTACACTTTTTTTCAAGAGGGTTTAATGGAAGCGCAAGAAAATCTCTCCCTTAAAAA TATTTTTAAAACCTTGAGTTCTAAAGACGCTAAAGCCATAGAAGAGTTGCAAGACAAACTGCGTTTTTTAGCGCCAAAGT TGGGCGTTTCTATCCAAGCGCGCCATCTTAAAAACCTTTTAGAAGCCTTTTATCACCAAAATAAAGAGAGTTTGGGCTTT TTTTCCCCTTATTTTAGCTTGCGTTCTCAAACCCCTAGCGTCTCTTATGAAAGCGCGTTAGCTTCTTTAGAAAACTATTT TATATCCTTGTTCCAATCCCATTTTAAAGACGACGCAAAGCTCCAACAAAATTTTAAAGGATTGTTGCAAGCCTTTGTTT CTATGGCTAAAGACAAACGATCCCAAATCGCTCTTAACGCCCAAGCTAAAGACAACGCCAAGCTGACTTTTAACGCCCTG TTAGAAAGCCTTAGCGTGAATTTCTTTCAATCTTACAAAATAAACCATGAGTGA
Upstream 100 bases:
>100_bases CCTAACAAACACGATATTTTCTATTCTAAAAATAAGAAAATGTATTTTATGAGTTCTATCATTATGCTTTCAATAAAGGG TTTTTTTGACTAAAAAATTC
Downstream 100 bases:
>100_bases TTTCAAAGTCCCCCCCAAAGCTAAAGGGTTTAAACGCCTTTTTAAAGCCCTTTTTTATTCTAAAGACGGGCTTAAATGCG CATGGGTTGAAGAGAGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MSWMVVIGALICVLLGVFIFFTSMSVKKSLTAYLNAYLDQRPKIKGVGIVGTPFECEGFFKIACVSKEISFLDSQNSPIM DFKNLSIKLNSLDKSSLVLSVHSQIKSPILEQSIQQKIHQIPLKDLNALLEKIKPTRLNCSLKFNALDEKTLNDHLKCDL TNTENILAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFLAPKLGVSIQARHLKNLLEAFYHQNKESLGF FSPYFSLRSQTPSVSYESALASLENYFISLFQSHFKDDAKLQQNFKGLLQAFVSMAKDKRSQIALNAQAKDNAKLTFNAL LESLSVNFFQSYKINHE
Sequences:
>Translated_337_residues MSWMVVIGALICVLLGVFIFFTSMSVKKSLTAYLNAYLDQRPKIKGVGIVGTPFECEGFFKIACVSKEISFLDSQNSPIM DFKNLSIKLNSLDKSSLVLSVHSQIKSPILEQSIQQKIHQIPLKDLNALLEKIKPTRLNCSLKFNALDEKTLNDHLKCDL TNTENILAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFLAPKLGVSIQARHLKNLLEAFYHQNKESLGF FSPYFSLRSQTPSVSYESALASLENYFISLFQSHFKDDAKLQQNFKGLLQAFVSMAKDKRSQIALNAQAKDNAKLTFNAL LESLSVNFFQSYKINHE >Mature_336_residues SWMVVIGALICVLLGVFIFFTSMSVKKSLTAYLNAYLDQRPKIKGVGIVGTPFECEGFFKIACVSKEISFLDSQNSPIMD FKNLSIKLNSLDKSSLVLSVHSQIKSPILEQSIQQKIHQIPLKDLNALLEKIKPTRLNCSLKFNALDEKTLNDHLKCDLT NTENILAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFLAPKLGVSIQARHLKNLLEAFYHQNKESLGFF SPYFSLRSQTPSVSYESALASLENYFISLFQSHFKDDAKLQQNFKGLLQAFVSMAKDKRSQIALNAQAKDNAKLTFNALL ESLSVNFFQSYKINHE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38149; Mature: 38017
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWMVVIGALICVLLGVFIFFTSMSVKKSLTAYLNAYLDQRPKIKGVGIVGTPFECEGFF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCE KIACVSKEISFLDSQNSPIMDFKNLSIKLNSLDKSSLVLSVHSQIKSPILEQSIQQKIHQ EEEEEHHHHHHHCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH IPLKDLNALLEKIKPTRLNCSLKFNALDEKTLNDHLKCDLTNTENILAYTFFQEGLMEAQ CCHHHHHHHHHHCCCCEEEEEEEECCCCCHHCCCCCEEEECCCCCHHHHHHHHHHHHHHH ENLSLKNIFKTLSSKDAKAIEELQDKLRFLAPKLGVSIQARHLKNLLEAFYHQNKESLGF HCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHCCCCCCCC FSPYFSLRSQTPSVSYESALASLENYFISLFQSHFKDDAKLQQNFKGLLQAFVSMAKDKR CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH SQIALNAQAKDNAKLTFNALLESLSVNFFQSYKINHE HHEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SWMVVIGALICVLLGVFIFFTSMSVKKSLTAYLNAYLDQRPKIKGVGIVGTPFECEGFF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCE KIACVSKEISFLDSQNSPIMDFKNLSIKLNSLDKSSLVLSVHSQIKSPILEQSIQQKIHQ EEEEEHHHHHHHCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH IPLKDLNALLEKIKPTRLNCSLKFNALDEKTLNDHLKCDLTNTENILAYTFFQEGLMEAQ CCHHHHHHHHHHCCCCEEEEEEEECCCCCHHCCCCCEEEECCCCCHHHHHHHHHHHHHHH ENLSLKNIFKTLSSKDAKAIEELQDKLRFLAPKLGVSIQARHLKNLLEAFYHQNKESLGF HCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHCCCCCCCC FSPYFSLRSQTPSVSYESALASLENYFISLFQSHFKDDAKLQQNFKGLLQAFVSMAKDKR CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH SQIALNAQAKDNAKLTFNALLESLSVNFFQSYKINHE HHEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA