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The map label for this gene is yulB [H]

Identifier: 187927658

GI number: 187927658

Start: 594465

End: 595229

Strand: Reverse

Name: yulB [H]

Synonym: Rpic_0561

Alternate gene names: 187927658

Gene position: 595229-594465 (Counterclockwise)

Preceding gene: 187927659

Following gene: 187927657

Centisome position: 15.1

GC content: 66.41

Gene sequence:

>765_bases
ATGAAAGTCACGAAGCGCCGCGAGGCCATGCTGAAAGCCGTGCTGGGCGGAATGAACGACGTCGCCACACTGTGCGAGCA
CTTCGGCATGTCGGAAGCCACCGTGCGCCGCGACCTGCGCGCGCTCGCTTCCGATCGCCGCATCCTGCGCACGTATGGCG
GCGCGGCGGCGGTCGGTTCGCACGAACCCGAAGCCCCGCTGGAAGAGCGCCGCAGCAGCGCACGTGAGCAGAAGGAAGCG
ATTGCCCGCCTCGCGCAAGCACACATCGCCGACGGCGACACCATCTTCCTCGACGGCGGCACGACCACCGCGGCACTGGC
GCGTCACCTGTCCGGCAAGCAGATCCACGTTGTCACGAACAACTTGATGGTCGTGACATCGCTGGCGGCTGGCGGCATCC
CGGTCACGCTCATCGGCGGTGATGTGCGCCCGTCGAGCATGAGCACGCTTGGGCCGCTCGCGCAGTTGTCGCTCGGCCGC
GTGAGTGTCGACAAGGCATTTCTGAGCGCCGACGGCGTGGTCGCCACCAACGGCCTGTGTGAAGCGTCGGCCGATCAGGC
GTATCTGAAGGAATGCGTCATCCGTCAGGCCGCGCAGGTGATCGTGCTGGCCACGGCGGACAAGCTCGGGCGCGCCACCC
AGCAGCACTGGACGCCTATCGAACGACCCTGGACGCTCATCACCGACAACGGTGCATCGCCCGATCAACTGGACCCATTC
CACGAACGCGACGAGGTCGACGTGGAAATCGCCCCGCTGGACTAA

Upstream 100 bases:

>100_bases
ATACGTGACGGTTGACGAATCGTGGGTGCGCGGCTGACCCCGTTTGGGGCCGATTTGCTACAGTGGCTCCCCATCTGAGG
TCGGTTGGATATTTGCAGAC

Downstream 100 bases:

>100_bases
GCATGCCAACCCGCCCCGCACCGCAAGCCGCTGCCGCCCGTCATGCCATCGTGACTGGCGCCTCCTCGGGCATCGGCCGC
GCCATTGCAGAGCGCCTGCT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKVTKRREAMLKAVLGGMNDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGSHEPEAPLEERRSSAREQKEA
IARLAQAHIADGDTIFLDGGTTTAALARHLSGKQIHVVTNNLMVVTSLAAGGIPVTLIGGDVRPSSMSTLGPLAQLSLGR
VSVDKAFLSADGVVATNGLCEASADQAYLKECVIRQAAQVIVLATADKLGRATQQHWTPIERPWTLITDNGASPDQLDPF
HERDEVDVEIAPLD

Sequences:

>Translated_254_residues
MKVTKRREAMLKAVLGGMNDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGSHEPEAPLEERRSSAREQKEA
IARLAQAHIADGDTIFLDGGTTTAALARHLSGKQIHVVTNNLMVVTSLAAGGIPVTLIGGDVRPSSMSTLGPLAQLSLGR
VSVDKAFLSADGVVATNGLCEASADQAYLKECVIRQAAQVIVLATADKLGRATQQHWTPIERPWTLITDNGASPDQLDPF
HERDEVDVEIAPLD
>Mature_254_residues
MKVTKRREAMLKAVLGGMNDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGSHEPEAPLEERRSSAREQKEA
IARLAQAHIADGDTIFLDGGTTTAALARHLSGKQIHVVTNNLMVVTSLAAGGIPVTLIGGDVRPSSMSTLGPLAQLSLGR
VSVDKAFLSADGVVATNGLCEASADQAYLKECVIRQAAQVIVLATADKLGRATQQHWTPIERPWTLITDNGASPDQLDPF
HERDEVDVEIAPLD

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=239, Percent_Identity=30.9623430962343, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1789829, Length=214, Percent_Identity=31.7757009345794, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1790753, Length=211, Percent_Identity=29.8578199052133, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789519, Length=241, Percent_Identity=29.8755186721992, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787540, Length=231, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI226510968, Length=232, Percent_Identity=29.3103448275862, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788069, Length=211, Percent_Identity=28.9099526066351, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789170, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082344, Length=222, Percent_Identity=29.2792792792793, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790635, Length=227, Percent_Identity=25.1101321585903, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27109; Mature: 27109

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTKRREAMLKAVLGGMNDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGS
CCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCC
HEPEAPLEERRSSAREQKEAIARLAQAHIADGDTIFLDGGTTTAALARHLSGKQIHVVTN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEEEC
NLMVVTSLAAGGIPVTLIGGDVRPSSMSTLGPLAQLSLGRVSVDKAFLSADGVVATNGLC
CEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCC
EASADQAYLKECVIRQAAQVIVLATADKLGRATQQHWTPIERPWTLITDNGASPDQLDPF
CCCCHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
HERDEVDVEIAPLD
CCCCCCCEEEECCC
>Mature Secondary Structure
MKVTKRREAMLKAVLGGMNDVATLCEHFGMSEATVRRDLRALASDRRILRTYGGAAAVGS
CCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCC
HEPEAPLEERRSSAREQKEAIARLAQAHIADGDTIFLDGGTTTAALARHLSGKQIHVVTN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEEEC
NLMVVTSLAAGGIPVTLIGGDVRPSSMSTLGPLAQLSLGRVSVDKAFLSADGVVATNGLC
CEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCC
EASADQAYLKECVIRQAAQVIVLATADKLGRATQQHWTPIERPWTLITDNGASPDQLDPF
CCCCHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
HERDEVDVEIAPLD
CCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]