Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_010682 |
Length | 3,942,557 |
Click here to switch to the map view.
The map label for this gene is 187927227
Identifier: 187927227
GI number: 187927227
Start: 138985
End: 139923
Strand: Reverse
Name: 187927227
Synonym: Rpic_0119
Alternate gene names: NA
Gene position: 139923-138985 (Counterclockwise)
Preceding gene: 187927228
Following gene: 187927226
Centisome position: 3.55
GC content: 66.56
Gene sequence:
>939_bases GTGAACAGCAACACCGCGCGAACGTGGCGCAGCGCCTTGGCAGCCGTTGGCTGCGCGCTGCTGCTTGCGGCCGCGCATGC GAGCGAAACCGCTCAGTCCGGCATCAGCGAGATCATCGTGGAGGTGCCCAAGTCTGCGGGCATCTTCACCCTCAAGCTGG AGACGACCGTCTACAAGCCGGCCGGCGACGGCCCTTTTCCGCTCATCGTGCTCAATCACGGCAAGGCGCGCGGCAAGGCG GCATTCCAAGCGCGTGCCCGTTACAGCGAGCAGGCTGCGGCGCTGGTCGCGCGCGGCTACGTAGTGGCCATCCCGATGCG GCAGGGGTTCGCCAAATCCGGCGGCGCGTATATCGGCAGCGGTTGCAACGTGGAAGCCAACGGCATCATCCAGGCCGAAG ACGTGGTGGCCACGCTCGACTACATGACCGCGCAGCCGTACGTGGACCGCAACCGCATCGTCGTCATGGGCCAGTCGCAC GGCGGCCTAACCACGCTGGCCTTCGGTACCATCGCCTACCCGGGCGTGCGCGGGCTGGTGAACTTTGCCGGCGGCCTGCG CAACGACACCTGCGTCGATTGGGAAGGCAACCTAGTGCGCGCGTTCGAGACGTACGGCCGCCAGTCGCGCTATCCGTCGC TCTGGTTCTACGGCGACAACGACAGCTACTGGCCCAAGCCGATGCCCGACAGGATGTTCGCGGCCTACACGAGTGCGGGC GGAAAAGGCCGGCTGGTGGATTTCGGCACCTTCAAGAGCGACTCGCACGGCATGTTCGCAAGCCACGCGGGGTTGGGCAT CTGGCTGCCGCAGGTCGACGCCTTCCTGCGCGAACTTGGCTTGCCCGCCGGCCCGGTGCAAGCGGTGGCACCAGGCAGCA ACGCTGAAGCATCCGGCGCAGACGACCCCAAGTCCGACACCAACAAGGACCCCGAATGA
Upstream 100 bases:
>100_bases GGCCTCGGCCTGTCGGCGAGCCTGAACGCGCCCATTGGCGACATGAACTTCGGCGTGTTCCGCATGTAAGCGGGCCGTCA ATCGAACAGGAATATTTGCA
Downstream 100 bases:
>100_bases ACACTTTCGAGACCCTCGCCTTCGCACAGAACGGCGCCGTCGCCACGCTCACGCTGAACCGGCCCGACGTGCGCAACGCC TTCAACGAGACCGTCATCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide Protein; Dipeptidyl Aminopeptidase/Acylaminoacyl-Peptidase; Dienelactone Hydrolase And Related S-Like Protein; Dienelactone Hydrolase-Like; Acylamino-Acid-Releasing; Dipeptidyl; Dienelactone Hydrolase And Related S Protein; Subfamily S9C Unassigned Peptidase; Dienelactone Hydrolase-Like Protein; Lipoprotein
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MNSNTARTWRSALAAVGCALLLAAAHASETAQSGISEIIVEVPKSAGIFTLKLETTVYKPAGDGPFPLIVLNHGKARGKA AFQARARYSEQAAALVARGYVVAIPMRQGFAKSGGAYIGSGCNVEANGIIQAEDVVATLDYMTAQPYVDRNRIVVMGQSH GGLTTLAFGTIAYPGVRGLVNFAGGLRNDTCVDWEGNLVRAFETYGRQSRYPSLWFYGDNDSYWPKPMPDRMFAAYTSAG GKGRLVDFGTFKSDSHGMFASHAGLGIWLPQVDAFLRELGLPAGPVQAVAPGSNAEASGADDPKSDTNKDPE
Sequences:
>Translated_312_residues MNSNTARTWRSALAAVGCALLLAAAHASETAQSGISEIIVEVPKSAGIFTLKLETTVYKPAGDGPFPLIVLNHGKARGKA AFQARARYSEQAAALVARGYVVAIPMRQGFAKSGGAYIGSGCNVEANGIIQAEDVVATLDYMTAQPYVDRNRIVVMGQSH GGLTTLAFGTIAYPGVRGLVNFAGGLRNDTCVDWEGNLVRAFETYGRQSRYPSLWFYGDNDSYWPKPMPDRMFAAYTSAG GKGRLVDFGTFKSDSHGMFASHAGLGIWLPQVDAFLRELGLPAGPVQAVAPGSNAEASGADDPKSDTNKDPE >Mature_312_residues MNSNTARTWRSALAAVGCALLLAAAHASETAQSGISEIIVEVPKSAGIFTLKLETTVYKPAGDGPFPLIVLNHGKARGKA AFQARARYSEQAAALVARGYVVAIPMRQGFAKSGGAYIGSGCNVEANGIIQAEDVVATLDYMTAQPYVDRNRIVVMGQSH GGLTTLAFGTIAYPGVRGLVNFAGGLRNDTCVDWEGNLVRAFETYGRQSRYPSLWFYGDNDSYWPKPMPDRMFAAYTSAG GKGRLVDFGTFKSDSHGMFASHAGLGIWLPQVDAFLRELGLPAGPVQAVAPGSNAEASGADDPKSDTNKDPE
Specific function: Unknown
COG id: COG0412
COG function: function code Q; Dienelactone hydrolase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33061; Mature: 33061
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSNTARTWRSALAAVGCALLLAAAHASETAQSGISEIIVEVPKSAGIFTLKLETTVYKP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECC AGDGPFPLIVLNHGKARGKAAFQARARYSEQAAALVARGYVVAIPMRQGFAKSGGAYIGS CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEECC GCNVEANGIIQAEDVVATLDYMTAQPYVDRNRIVVMGQSHGGLTTLAFGTIAYPGVRGLV CCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEHHHHHCCHHHHHH NFAGGLRNDTCVDWEGNLVRAFETYGRQSRYPSLWFYGDNDSYWPKPMPDRMFAAYTSAG HHHCCCCCCEEECCCCCEEHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCC GKGRLVDFGTFKSDSHGMFASHAGLGIWLPQVDAFLRELGLPAGPVQAVAPGSNAEASGA CCCEEEEECCCCCCCCCEEEECCCCEEEHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC DDPKSDTNKDPE CCCCCCCCCCCC >Mature Secondary Structure MNSNTARTWRSALAAVGCALLLAAAHASETAQSGISEIIVEVPKSAGIFTLKLETTVYKP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECC AGDGPFPLIVLNHGKARGKAAFQARARYSEQAAALVARGYVVAIPMRQGFAKSGGAYIGS CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEECC GCNVEANGIIQAEDVVATLDYMTAQPYVDRNRIVVMGQSHGGLTTLAFGTIAYPGVRGLV CCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEHHHHHCCHHHHHH NFAGGLRNDTCVDWEGNLVRAFETYGRQSRYPSLWFYGDNDSYWPKPMPDRMFAAYTSAG HHHCCCCCCEEECCCCCEEHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCC GKGRLVDFGTFKSDSHGMFASHAGLGIWLPQVDAFLRELGLPAGPVQAVAPGSNAEASGA CCCEEEEECCCCCCCCCEEEECCCCEEEHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC DDPKSDTNKDPE CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA