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The map label for this gene is ybeQ [H]

Identifier: 187927208

GI number: 187927208

Start: 115479

End: 116249

Strand: Reverse

Name: ybeQ [H]

Synonym: Rpic_0100

Alternate gene names: 187927208

Gene position: 116249-115479 (Counterclockwise)

Preceding gene: 187927209

Following gene: 187927207

Centisome position: 2.95

GC content: 70.04

Gene sequence:

>771_bases
ATGCCGGCCGACGCTGCAACCGCCGCAGCCGCCGGAGCCACCGCAGCCGATCCTGCGGTGGTCGATGCCATCCACGCCGT
GCTCACCGGCCCCGCTGACCGCGCCGCGCGCTGGCTGGCGGCAGCCGCCCGGCGCGGGCACACGGAAGCGCAGGCCATCT
TCGGCCAATGGCTGCTCGATGGCCGCGGTGTTGAACGCAACCCGGCCGAAGCGTTGTTCTGGTTCAAGACGGCCGCGCTG
TCGGGCCACGCGATGGCCGCCAACATGCTGGGCCGCTGCTATGAGCACGGCTGGGGCGCGCCCGCCTGCGACAAGACCGC
CACGCACTGGTACGCCCGCGCCGCCGATGCTGGCCTCGACTGGGGCCAGTACAACTACGCAACACGCCTGCAACTCGGGC
GCGGCATCCCGGCGGACCGCGCCCGCGCGTTTGCACTGTTCCAAGCGGCGGCCGCACAAGGGCACGCCAAGTCGATCAAC
GTGCTGGGGGGCTTCTATGAAGACGGCTGGGAAGTCGAGGCGGACACGGCGATGGCCCTGCGCTGCTACCTGCGCGCCGC
AGCGGGCGGCGACTTCCGCGGCCAGTTCAACGCAGCACGCCTGCTCGCCCTCGCGAATCACGCAGACGATGCCCTCGGCT
GGATGCAGGCGGTGCCGCGCACCGCCACCCCGACCTTTCTTGCGAAAGCGCATGACTTTCTCGCCGGTCATCCCGATGTG
CGTTTGCGCGCGTTGGCCGACGTGCTGAAAACCCCATCGTTATGTTGCTGA

Upstream 100 bases:

>100_bases
ACGTGTTCGACAAGGTGTACTTCAATCAGGCGTATGCATCGCATTACGCATCGCTGGCACCGGGCCGCACGGCCATCCTG
ACGCTGGGCATTCGCTACTG

Downstream 100 bases:

>100_bases
AGATTTCCGCCGTGCTCACCAAGGAACAGGTCGCGCAGTGCCGCGCCACGATCGACGCTGCCGAGTGGGTGGACGGCAAG
GTCACGGCCGGCGCGCAGTC

Product: Sel1 domain-containing protein repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MPADAATAAAAGATAADPAVVDAIHAVLTGPADRAARWLAAAARRGHTEAQAIFGQWLLDGRGVERNPAEALFWFKTAAL
SGHAMAANMLGRCYEHGWGAPACDKTATHWYARAADAGLDWGQYNYATRLQLGRGIPADRARAFALFQAAAAQGHAKSIN
VLGGFYEDGWEVEADTAMALRCYLRAAAGGDFRGQFNAARLLALANHADDALGWMQAVPRTATPTFLAKAHDFLAGHPDV
RLRALADVLKTPSLCC

Sequences:

>Translated_256_residues
MPADAATAAAAGATAADPAVVDAIHAVLTGPADRAARWLAAAARRGHTEAQAIFGQWLLDGRGVERNPAEALFWFKTAAL
SGHAMAANMLGRCYEHGWGAPACDKTATHWYARAADAGLDWGQYNYATRLQLGRGIPADRARAFALFQAAAAQGHAKSIN
VLGGFYEDGWEVEADTAMALRCYLRAAAGGDFRGQFNAARLLALANHADDALGWMQAVPRTATPTFLAKAHDFLAGHPDV
RLRALADVLKTPSLCC
>Mature_255_residues
PADAATAAAAGATAADPAVVDAIHAVLTGPADRAARWLAAAARRGHTEAQAIFGQWLLDGRGVERNPAEALFWFKTAALS
GHAMAANMLGRCYEHGWGAPACDKTATHWYARAADAGLDWGQYNYATRLQLGRGIPADRARAFALFQAAAAQGHAKSINV
LGGFYEDGWEVEADTAMALRCYLRAAAGGDFRGQFNAARLLALANHADDALGWMQAVPRTATPTFLAKAHDFLAGHPDVR
LRALADVLKTPSLCC

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=167, Percent_Identity=33.5329341317365, Blast_Score=82, Evalue=4e-16,
Organism=Escherichia coli, GI87081769, Length=175, Percent_Identity=37.1428571428571, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 27083; Mature: 26952

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPADAATAAAAGATAADPAVVDAIHAVLTGPADRAARWLAAAARRGHTEAQAIFGQWLLD
CCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GRGVERNPAEALFWFKTAALSGHAMAANMLGRCYEHGWGAPACDKTATHWYARAADAGLD
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
WGQYNYATRLQLGRGIPADRARAFALFQAAAAQGHAKSINVLGGFYEDGWEVEADTAMAL
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEHEEECCCCCCCEECHHHHHHH
RCYLRAAAGGDFRGQFNAARLLALANHADDALGWMQAVPRTATPTFLAKAHDFLAGHPDV
HHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCH
RLRALADVLKTPSLCC
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PADAATAAAAGATAADPAVVDAIHAVLTGPADRAARWLAAAARRGHTEAQAIFGQWLLD
CCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
GRGVERNPAEALFWFKTAALSGHAMAANMLGRCYEHGWGAPACDKTATHWYARAADAGLD
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
WGQYNYATRLQLGRGIPADRARAFALFQAAAAQGHAKSINVLGGFYEDGWEVEADTAMAL
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEHEEECCCCCCCEECHHHHHHH
RCYLRAAAGGDFRGQFNAARLLALANHADDALGWMQAVPRTATPTFLAKAHDFLAGHPDV
HHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCH
RLRALADVLKTPSLCC
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]