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The map label for this gene is ybiX [C]

Identifier: 187927207

GI number: 187927207

Start: 114805

End: 115488

Strand: Reverse

Name: ybiX [C]

Synonym: Rpic_0099

Alternate gene names: 187927207

Gene position: 115488-114805 (Counterclockwise)

Preceding gene: 187927208

Following gene: 187927205

Centisome position: 2.93

GC content: 65.5

Gene sequence:

>684_bases
ATGTTGCTGAAGATTTCCGCCGTGCTCACCAAGGAACAGGTCGCGCAGTGCCGCGCCACGATCGACGCTGCCGAGTGGGT
GGACGGCAAGGTCACGGCCGGCGCGCAGTCCGGCCAGGTAAAGCACAACATGCAACTGCCCGAAGGCTCGCTGGCTGCGC
GCCAGGTCGGCACCTTGATCCAGGATGCGCTGTCTGCCAATACGCTGTTCTTCTCGGCTGCGTTGCCGCTCAAGGTGTTT
CCGCCGCTGTTCAACCGCTACGCGGGCGGCCAGACCTTCGGCAACCACGTCGACAACGCCGTGCGCCATCTGCGCGGCAC
CGCTTTCCGCATCCGCAGCGACCTCTCCTGCACGCTGTTCCTGACCGAGCCCGAAGACTACGACGGCGGCGAACTCGTGA
TCGACGACACCTTCGGCGAACACCGCGTCAAGCTTGCCGCTGGCGACATGGTGCTCTACCCCAGCAGCAGCCTGCACCGC
GTGACACCGGTTGTGCGCGGTGCGCGCGTTTGCTCGTTCTTCTGGCTGCAGAGCATGGTGCGCAGCGACGCGCATCGCAC
GCTGCTGTTCCAGATGGACACGGAACTGCAGCGGCTGATGGGGCTGCTGGGGCAGGACGACCCGTCCGTCATTGCGTTGA
CGGGGACGTATCACAACCTGCTGCGGGAGTGGGCCGACGCCTGA

Upstream 100 bases:

>100_bases
CCGCCACCCCGACCTTTCTTGCGAAAGCGCATGACTTTCTCGCCGGTCATCCCGATGTGCGTTTGCGCGCGTTGGCCGAC
GTGCTGAAAACCCCATCGTT

Downstream 100 bases:

>100_bases
ACGGTCGCCTCAGGCGAAGTACGCGCGCATCTCCTCGAGCAAGGCCTCCGGGGCTTCCTCCGGCACGTAGTGCCCGCACG
GCACCGTGCCGCCGCTCACG

Product: 2OG-Fe(II) oxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MLLKISAVLTKEQVAQCRATIDAAEWVDGKVTAGAQSGQVKHNMQLPEGSLAARQVGTLIQDALSANTLFFSAALPLKVF
PPLFNRYAGGQTFGNHVDNAVRHLRGTAFRIRSDLSCTLFLTEPEDYDGGELVIDDTFGEHRVKLAAGDMVLYPSSSLHR
VTPVVRGARVCSFFWLQSMVRSDAHRTLLFQMDTELQRLMGLLGQDDPSVIALTGTYHNLLREWADA

Sequences:

>Translated_227_residues
MLLKISAVLTKEQVAQCRATIDAAEWVDGKVTAGAQSGQVKHNMQLPEGSLAARQVGTLIQDALSANTLFFSAALPLKVF
PPLFNRYAGGQTFGNHVDNAVRHLRGTAFRIRSDLSCTLFLTEPEDYDGGELVIDDTFGEHRVKLAAGDMVLYPSSSLHR
VTPVVRGARVCSFFWLQSMVRSDAHRTLLFQMDTELQRLMGLLGQDDPSVIALTGTYHNLLREWADA
>Mature_227_residues
MLLKISAVLTKEQVAQCRATIDAAEWVDGKVTAGAQSGQVKHNMQLPEGSLAARQVGTLIQDALSANTLFFSAALPLKVF
PPLFNRYAGGQTFGNHVDNAVRHLRGTAFRIRSDLSCTLFLTEPEDYDGGELVIDDTFGEHRVKLAAGDMVLYPSSSLHR
VTPVVRGARVCSFFWLQSMVRSDAHRTLLFQMDTELQRLMGLLGQDDPSVIALTGTYHNLLREWADA

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain [H]

Homologues:

Organism=Escherichia coli, GI87081784, Length=226, Percent_Identity=50.8849557522124, Blast_Score=240, Evalue=5e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005123
- InterPro:   IPR006620 [H]

Pfam domain/function: PF03171 2OG-FeII_Oxy [H]

EC number: 1.14.11.- [C]

Molecular weight: Translated: 24990; Mature: 24990

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKISAVLTKEQVAQCRATIDAAEWVDGKVTAGAQSGQVKHNMQLPEGSLAARQVGTLI
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEECCCCCCCHHHHHHHHHHH
QDALSANTLFFSAALPLKVFPPLFNRYAGGQTFGNHVDNAVRHLRGTAFRIRSDLSCTLF
HHHHCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEE
LTEPEDYDGGELVIDDTFGEHRVKLAAGDMVLYPSSSLHRVTPVVRGARVCSFFWLQSMV
EECCCCCCCCEEEEECCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
RSDAHRTLLFQMDTELQRLMGLLGQDDPSVIALTGTYHNLLREWADA
HCCHHEEEEEEECHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHCC
>Mature Secondary Structure
MLLKISAVLTKEQVAQCRATIDAAEWVDGKVTAGAQSGQVKHNMQLPEGSLAARQVGTLI
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEECCCCCCCHHHHHHHHHHH
QDALSANTLFFSAALPLKVFPPLFNRYAGGQTFGNHVDNAVRHLRGTAFRIRSDLSCTLF
HHHHCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEE
LTEPEDYDGGELVIDDTFGEHRVKLAAGDMVLYPSSSLHRVTPVVRGARVCSFFWLQSMV
EECCCCCCCCEEEEECCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
RSDAHRTLLFQMDTELQRLMGLLGQDDPSVIALTGTYHNLLREWADA
HCCHHEEEEEEECHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA