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The map label for this gene is bfrD [H]

Identifier: 187927209

GI number: 187927209

Start: 116249

End: 118528

Strand: Reverse

Name: bfrD [H]

Synonym: Rpic_0101

Alternate gene names: 187927209

Gene position: 118528-116249 (Counterclockwise)

Preceding gene: 187927218

Following gene: 187927208

Centisome position: 3.01

GC content: 66.01

Gene sequence:

>2280_bases
ATGTCCGCAGCACAGATCGAACGCAAGCGCACCGAACATTCGGTGGTGGGTTATCTGACCGGCGCGATGAGCTTCGCCGT
GGTTTCGGCGCCGGCACTGGCCGACACGAAGAAAGACGCCGTGTCCGCCACCCTGCCCGAGCAAACCGTCACCGGCACCA
ACGGGTTCAAGGCGGATGCGGCCTCGGGCGGCAAATTCACCGCGCCGCTGCTCGATACGCCCAAGTCCGTCACGGTGATC
CCCGCAGAGGTATTGCAGGGCACCGGCTCCGTCACACTCACCGAGGCGCTGCGCACGGTGCCGGGCATCGCATTTGGCGC
CGGCGAAGGCGGCAACCCCGTCGGTGATCGCCCGTTCATCCGCGGCTACGACGCGCAGGCCAGTACCTTCCTCGACGGGC
TGCGCGACATCGGTGCGCAATCGCGCGAAATGTTCAACGTGGAATCGGTGGAAGTCATCAAGGGCCCGTCGGGTGCGTAT
GAAGGCCGCGGCGCGGCAGGCGGGGCGGTCAACATCCTCACCAAGACGCCCAAGCTTGAGCACTTCACCGAGGGCACGCT
GTCGGTCGGCAACGCGGCGTACAAGCGGGCCACGGCCGACGGCAACTACCAGATCGGCGAGCACGCCGCGTTCCGCCTGA
ACGCGATGGCGCACGACGCCGCCGTTGCCGGCCGTGACGTGACGAGCTTCAGCCGCTGGGGCATCGCGCCGTCCATCGCC
GTTGGGCTCGGTACGCCCACGCGCGCCACGCTGTCGTACTACCACCTGCAATCGAACGACACGCCAGACACGGGCATTCC
ATACAACAACGGCACGTTCAACCGCCGCACCGACGGCCGCCCGCAACTGTTCGGCCCCGGCGACGGCGCGCCCGTGAATG
TCGACCGCAACGTCTACTACGGCCTGTCGCGCGACTTCCGCCGCGACCGCGTCGACATGGGCACCTTCACGCTGGAGCAC
GATGTGTCGAGCGCGCTGAAGCTGCGCAACACCATGCGCATTGCCCGCACGAGCCAGGACACCATCTGGACGCAGCCCGA
CGACAGCCAGGGCAACATCTATTACGGCATGGTCTGGCGCCGCACCAATTCGCGCTCTTCGGTGGCCAACACCGTCGCCA
ACCAGACGGAAGCGACCGGCAAGTTCGACACCGGTGGCCTCAAGCACAGCTATGCGGCCGGCCTGGAGTTCTCGCGCGAG
CGCAGCAGCAACGACACCTACGCCGTGGCCACCGGCAGCAACCGCTGCCCCAACGGCATCGGCGCGGCGGGCGGCTACAA
CTGCGCAGATCTCTTCAACCCAAACCCGAACGACCCCTGGGCCGGCGGCATCAGGCTCAACAACAATCCAGCAGAGACGA
CGGTGCGCACGCAGTCGGCCTACGTATTCGACACGGTCGAGCTGTCGCCACGGTGGCAAGTCAACGGCGGGCTGCGCTTT
GATCGCTATTCGGCATCGGCCACCACGTCGGCGAATGCGCAGGGCGTGCGTTCGAGCTTCTCGCGCGACGACAACCTGCT
GAACTACCAGCTCGGCCTCGTGTTCAAGCCTGCGCAGAACGGCAGCATCTATCTGGCGTACGGCACATCGTCGACGCCGT
CGGGCTCGGTGGCGGGCCAGGGTGCCGATACAAGCGCGCTCACGCCTGACCGCTCCAGCAATCGCGGGGACGTGCTCGCT
CCGGAAAAGAACCGCGCCTACGAACTCGGCACCAAGTGGAACGTGCTCGACAGCAAGCTGGCACTGACGGCCGCGATCTT
CCGGATCGAGACGACCAACGCCCGCATCGTGCAGCAGGACGGCACCGCCGCCATGGCGGGCAACAAGCGCGTCGATGGCT
TCGAGCTGGGCTGGTCGGGCGCGCTGACCAACCGCTGGCAGGTGTTCGGAGGCTACACGTATCTGAAGAGCGAACTGCGC
AACAACGGCGGCGCAGGCGCAGCCTTTGGCGGCACCAACGGAACGGCCTTCCCCAACACGCCAAAGAACAGCTTCAGCCT
GTGGACGACCTATCAGCCGATGCCGAAGCTCACGCTCGGCGGCGGCGCGTATTACGTCTCGAAGGTGTGGGGCAGCGCCA
ACCCCGCCAACCCGAAGTGGGTGCCGGCCTACTGGCGCTTTGACGCCATGGCCGCCTACCGCATCGACAAGCACACCACG
TTGCAGCTGAATGTGCAGAACGTGTTCGACAAGGTGTACTTCAATCAGGCGTATGCATCGCATTACGCATCGCTGGCACC
GGGCCGCACGGCCATCCTGACGCTGGGCATTCGCTACTGA

Upstream 100 bases:

>100_bases
ATTCGCCAGCCGACGCGTTGACTCGCTCACATTTGAACGATAACAATTCTCATTTACAAAAAACATGTGGCAAAAACTTT
CAGGGGAGTGTCACCACGTC

Downstream 100 bases:

>100_bases
TGCCGGCCGACGCTGCAACCGCCGCAGCCGCCGGAGCCACCGCAGCCGATCCTGCGGTGGTCGATGCCATCCACGCCGTG
CTCACCGGCCCCGCTGACCG

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 759; Mature: 758

Protein sequence:

>759_residues
MSAAQIERKRTEHSVVGYLTGAMSFAVVSAPALADTKKDAVSATLPEQTVTGTNGFKADAASGGKFTAPLLDTPKSVTVI
PAEVLQGTGSVTLTEALRTVPGIAFGAGEGGNPVGDRPFIRGYDAQASTFLDGLRDIGAQSREMFNVESVEVIKGPSGAY
EGRGAAGGAVNILTKTPKLEHFTEGTLSVGNAAYKRATADGNYQIGEHAAFRLNAMAHDAAVAGRDVTSFSRWGIAPSIA
VGLGTPTRATLSYYHLQSNDTPDTGIPYNNGTFNRRTDGRPQLFGPGDGAPVNVDRNVYYGLSRDFRRDRVDMGTFTLEH
DVSSALKLRNTMRIARTSQDTIWTQPDDSQGNIYYGMVWRRTNSRSSVANTVANQTEATGKFDTGGLKHSYAAGLEFSRE
RSSNDTYAVATGSNRCPNGIGAAGGYNCADLFNPNPNDPWAGGIRLNNNPAETTVRTQSAYVFDTVELSPRWQVNGGLRF
DRYSASATTSANAQGVRSSFSRDDNLLNYQLGLVFKPAQNGSIYLAYGTSSTPSGSVAGQGADTSALTPDRSSNRGDVLA
PEKNRAYELGTKWNVLDSKLALTAAIFRIETTNARIVQQDGTAAMAGNKRVDGFELGWSGALTNRWQVFGGYTYLKSELR
NNGGAGAAFGGTNGTAFPNTPKNSFSLWTTYQPMPKLTLGGGAYYVSKVWGSANPANPKWVPAYWRFDAMAAYRIDKHTT
LQLNVQNVFDKVYFNQAYASHYASLAPGRTAILTLGIRY

Sequences:

>Translated_759_residues
MSAAQIERKRTEHSVVGYLTGAMSFAVVSAPALADTKKDAVSATLPEQTVTGTNGFKADAASGGKFTAPLLDTPKSVTVI
PAEVLQGTGSVTLTEALRTVPGIAFGAGEGGNPVGDRPFIRGYDAQASTFLDGLRDIGAQSREMFNVESVEVIKGPSGAY
EGRGAAGGAVNILTKTPKLEHFTEGTLSVGNAAYKRATADGNYQIGEHAAFRLNAMAHDAAVAGRDVTSFSRWGIAPSIA
VGLGTPTRATLSYYHLQSNDTPDTGIPYNNGTFNRRTDGRPQLFGPGDGAPVNVDRNVYYGLSRDFRRDRVDMGTFTLEH
DVSSALKLRNTMRIARTSQDTIWTQPDDSQGNIYYGMVWRRTNSRSSVANTVANQTEATGKFDTGGLKHSYAAGLEFSRE
RSSNDTYAVATGSNRCPNGIGAAGGYNCADLFNPNPNDPWAGGIRLNNNPAETTVRTQSAYVFDTVELSPRWQVNGGLRF
DRYSASATTSANAQGVRSSFSRDDNLLNYQLGLVFKPAQNGSIYLAYGTSSTPSGSVAGQGADTSALTPDRSSNRGDVLA
PEKNRAYELGTKWNVLDSKLALTAAIFRIETTNARIVQQDGTAAMAGNKRVDGFELGWSGALTNRWQVFGGYTYLKSELR
NNGGAGAAFGGTNGTAFPNTPKNSFSLWTTYQPMPKLTLGGGAYYVSKVWGSANPANPKWVPAYWRFDAMAAYRIDKHTT
LQLNVQNVFDKVYFNQAYASHYASLAPGRTAILTLGIRY
>Mature_758_residues
SAAQIERKRTEHSVVGYLTGAMSFAVVSAPALADTKKDAVSATLPEQTVTGTNGFKADAASGGKFTAPLLDTPKSVTVIP
AEVLQGTGSVTLTEALRTVPGIAFGAGEGGNPVGDRPFIRGYDAQASTFLDGLRDIGAQSREMFNVESVEVIKGPSGAYE
GRGAAGGAVNILTKTPKLEHFTEGTLSVGNAAYKRATADGNYQIGEHAAFRLNAMAHDAAVAGRDVTSFSRWGIAPSIAV
GLGTPTRATLSYYHLQSNDTPDTGIPYNNGTFNRRTDGRPQLFGPGDGAPVNVDRNVYYGLSRDFRRDRVDMGTFTLEHD
VSSALKLRNTMRIARTSQDTIWTQPDDSQGNIYYGMVWRRTNSRSSVANTVANQTEATGKFDTGGLKHSYAAGLEFSRER
SSNDTYAVATGSNRCPNGIGAAGGYNCADLFNPNPNDPWAGGIRLNNNPAETTVRTQSAYVFDTVELSPRWQVNGGLRFD
RYSASATTSANAQGVRSSFSRDDNLLNYQLGLVFKPAQNGSIYLAYGTSSTPSGSVAGQGADTSALTPDRSSNRGDVLAP
EKNRAYELGTKWNVLDSKLALTAAIFRIETTNARIVQQDGTAAMAGNKRVDGFELGWSGALTNRWQVFGGYTYLKSELRN
NGGAGAAFGGTNGTAFPNTPKNSFSLWTTYQPMPKLTLGGGAYYVSKVWGSANPANPKWVPAYWRFDAMAAYRIDKHTTL
QLNVQNVFDKVYFNQAYASHYASLAPGRTAILTLGIRY

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=735, Percent_Identity=35.3741496598639, Blast_Score=388, Evalue=1e-109,
Organism=Escherichia coli, GI1786344, Length=817, Percent_Identity=23.9902080783354, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1787344, Length=375, Percent_Identity=29.0666666666667, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 81282; Mature: 81151

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAQIERKRTEHSVVGYLTGAMSFAVVSAPALADTKKDAVSATLPEQTVTGTNGFKADA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCEECCCCCCCCCC
ASGGKFTAPLLDTPKSVTVIPAEVLQGTGSVTLTEALRTVPGIAFGAGEGGNPVGDRPFI
CCCCEEEECCCCCCCCEEEEEHHHHCCCCCEEHHHHHHHCCCEEEECCCCCCCCCCCCCE
RGYDAQASTFLDGLRDIGAQSREMFNVESVEVIKGPSGAYEGRGAAGGAVNILTKTPKLE
ECCCCHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC
HFTEGTLSVGNAAYKRATADGNYQIGEHAAFRLNAMAHDAAVAGRDVTSFSRWGIAPSIA
HHCCCCEECCCHHHHCCCCCCCEEECCCEEEEEECHHHHHHHCCCCCCHHHHCCCCCEEE
VGLGTPTRATLSYYHLQSNDTPDTGIPYNNGTFNRRTDGRPQLFGPGDGAPVNVDRNVYY
EECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCEEE
GLSRDFRRDRVDMGTFTLEHDVSSALKLRNTMRIARTSQDTIWTQPDDSQGNIYYGMVWR
CCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHEEECCCCCEECCCCCCCCCEEEEEEEE
RTNSRSSVANTVANQTEATGKFDTGGLKHSYAAGLEFSRERSSNDTYAVATGSNRCPNGI
ECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEHHCCCCCCCEEEEECCCCCCCCC
GAAGGYNCADLFNPNPNDPWAGGIRLNNNPAETTVRTQSAYVFDTVELSPRWQVNGGLRF
CCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEEEECCEEEEEEEECCCCEEECCCEEE
DRYSASATTSANAQGVRSSFSRDDNLLNYQLGLVFKPAQNGSIYLAYGTSSTPSGSVAGQ
EEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCC
GADTSALTPDRSSNRGDVLAPEKNRAYELGTKWNVLDSKLALTAAIFRIETTNARIVQQD
CCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCCHHHHHHEEEEEEEEEECCCCEEEEEC
GTAAMAGNKRVDGFELGWSGALTNRWQVFGGYTYLKSELRNNGGAGAAFGGTNGTAFPNT
CCEEECCCCCCCCEECCCCCCCCCCEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCC
PKNSFSLWTTYQPMPKLTLGGGAYYVSKVWGSANPANPKWVPAYWRFDAMAAYRIDKHTT
CCCCEEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCEEEHEEEECCEEEEEECCCEE
LQLNVQNVFDKVYFNQAYASHYASLAPGRTAILTLGIRY
EEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
>Mature Secondary Structure 
SAAQIERKRTEHSVVGYLTGAMSFAVVSAPALADTKKDAVSATLPEQTVTGTNGFKADA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCEECCCCCCCCCC
ASGGKFTAPLLDTPKSVTVIPAEVLQGTGSVTLTEALRTVPGIAFGAGEGGNPVGDRPFI
CCCCEEEECCCCCCCCEEEEEHHHHCCCCCEEHHHHHHHCCCEEEECCCCCCCCCCCCCE
RGYDAQASTFLDGLRDIGAQSREMFNVESVEVIKGPSGAYEGRGAAGGAVNILTKTPKLE
ECCCCHHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC
HFTEGTLSVGNAAYKRATADGNYQIGEHAAFRLNAMAHDAAVAGRDVTSFSRWGIAPSIA
HHCCCCEECCCHHHHCCCCCCCEEECCCEEEEEECHHHHHHHCCCCCCHHHHCCCCCEEE
VGLGTPTRATLSYYHLQSNDTPDTGIPYNNGTFNRRTDGRPQLFGPGDGAPVNVDRNVYY
EECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCEEE
GLSRDFRRDRVDMGTFTLEHDVSSALKLRNTMRIARTSQDTIWTQPDDSQGNIYYGMVWR
CCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHEEECCCCCEECCCCCCCCCEEEEEEEE
RTNSRSSVANTVANQTEATGKFDTGGLKHSYAAGLEFSRERSSNDTYAVATGSNRCPNGI
ECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEHHCCCCCCCEEEEECCCCCCCCC
GAAGGYNCADLFNPNPNDPWAGGIRLNNNPAETTVRTQSAYVFDTVELSPRWQVNGGLRF
CCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCEEEECCEEEEEEEECCCCEEECCCEEE
DRYSASATTSANAQGVRSSFSRDDNLLNYQLGLVFKPAQNGSIYLAYGTSSTPSGSVAGQ
EEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCC
GADTSALTPDRSSNRGDVLAPEKNRAYELGTKWNVLDSKLALTAAIFRIETTNARIVQQD
CCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCCHHHHHHEEEEEEEEEECCCCEEEEEC
GTAAMAGNKRVDGFELGWSGALTNRWQVFGGYTYLKSELRNNGGAGAAFGGTNGTAFPNT
CCEEECCCCCCCCEECCCCCCCCCCEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCC
PKNSFSLWTTYQPMPKLTLGGGAYYVSKVWGSANPANPKWVPAYWRFDAMAAYRIDKHTT
CCCCEEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCEEEHEEEECCEEEEEECCCEE
LQLNVQNVFDKVYFNQAYASHYASLAPGRTAILTLGIRY
EEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]