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The map label for this gene is 187932522

Identifier: 187932522

GI number: 187932522

Start: 2281649

End: 2282203

Strand: Reverse

Name: 187932522

Synonym: CLL_A2197

Alternate gene names: NA

Gene position: 2282203-2281649 (Counterclockwise)

Preceding gene: 187933854

Following gene: 187933043

Centisome position: 60.05

GC content: 23.78

Gene sequence:

>555_bases
ATGAAAATTGAAGAAGGAAACTTTATTTTTGAATTAAAAAAGAAAAATGAAAAAGCATTATATTATGTTATTGATAACTA
TGGATGGATTGTTAAATCTGTAGTTAAAAAGCATTTATATAATCTACAAAGTATCCAAGATGAATGTATTAACGATATAC
TTCTTGGAACTTGGAATAACATTGAAAAATTTGATTCAAGTAAAGGAAGTTTTAAAAATTGGATTGCTGGAATATCTAAA
TTTAAATGCATTGATTATAAACGAAAGTATTTGAAAGGATTAGAATATGAAAATATAGATGACTTAAATATAAGTACGCC
AGATAATGTTCATGAAGGAATTGTAAAGTGTGAATTGGAATCTGATATTGAACAAATACTAAATTGTTTAAAAGAAAAAG
ATAGAGAATTATTTTATAAGTTGTATATTGAGGAAAATGAAGTAAATGATATAACAAAAGAAATGGGAATTAAACGAGAA
ATTATATATAACAGATTATCAAGAGGGAAGAAAAGAATTCAAAAAATATTTAAGACATTAGAAAGTAGAGGGTAG

Upstream 100 bases:

>100_bases
AAGTGTAAGGGATAAGGCATGGTTAAAGTTAATTGAATAAATATTATTTTTAATATGCCTAAATTAATATTGCAAGCTTG
CTTTAGGGAGAAGGTTAAAA

Downstream 100 bases:

>100_bases
AGATATGAAAAATGATATATATGATATGTTGAATAAAGTTAATATAAATATTGATGATTATGAAAAAGAAGATTTTAATG
ACTTAGAGAAGAAAAAAATA

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70factor

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKIEEGNFIFELKKKNEKALYYVIDNYGWIVKSVVKKHLYNLQSIQDECINDILLGTWNNIEKFDSSKGSFKNWIAGISK
FKCIDYKRKYLKGLEYENIDDLNISTPDNVHEGIVKCELESDIEQILNCLKEKDRELFYKLYIEENEVNDITKEMGIKRE
IIYNRLSRGKKRIQKIFKTLESRG

Sequences:

>Translated_184_residues
MKIEEGNFIFELKKKNEKALYYVIDNYGWIVKSVVKKHLYNLQSIQDECINDILLGTWNNIEKFDSSKGSFKNWIAGISK
FKCIDYKRKYLKGLEYENIDDLNISTPDNVHEGIVKCELESDIEQILNCLKEKDRELFYKLYIEENEVNDITKEMGIKRE
IIYNRLSRGKKRIQKIFKTLESRG
>Mature_184_residues
MKIEEGNFIFELKKKNEKALYYVIDNYGWIVKSVVKKHLYNLQSIQDECINDILLGTWNNIEKFDSSKGSFKNWIAGISK
FKCIDYKRKYLKGLEYENIDDLNISTPDNVHEGIVKCELESDIEQILNCLKEKDRELFYKLYIEENEVNDITKEMGIKRE
IIYNRLSRGKKRIQKIFKTLESRG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21878; Mature: 21878

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEEGNFIFELKKKNEKALYYVIDNYGWIVKSVVKKHLYNLQSIQDECINDILLGTWNN
CCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IEKFDSSKGSFKNWIAGISKFKCIDYKRKYLKGLEYENIDDLNISTPDNVHEGIVKCELE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SDIEQILNCLKEKDRELFYKLYIEENEVNDITKEMGIKREIIYNRLSRGKKRIQKIFKTL
HHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ESRG
HCCC
>Mature Secondary Structure
MKIEEGNFIFELKKKNEKALYYVIDNYGWIVKSVVKKHLYNLQSIQDECINDILLGTWNN
CCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IEKFDSSKGSFKNWIAGISKFKCIDYKRKYLKGLEYENIDDLNISTPDNVHEGIVKCELE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
SDIEQILNCLKEKDRELFYKLYIEENEVNDITKEMGIKREIIYNRLSRGKKRIQKIFKTL
HHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ESRG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA