Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 187918309

GI number: 187918309

Start: 466642

End: 467364

Strand: Direct

Name: jag [H]

Synonym: BH0443

Alternate gene names: 187918309

Gene position: 466642-467364 (Clockwise)

Preceding gene: 187918308

Following gene: 187918310

Centisome position: 50.6

GC content: 28.49

Gene sequence:

>723_bases
ATGAGTTATGAGTTTTATGGAAAAACAGAACAAGAAGCAATTAAAAAAGCTATGAGAGATCTTGATTTAAAAGAAGGCGA
GTTTGATGTAGAGATTTTGGATAAGGAAAAGGTTGGGTTTTTATTTAAAAAAGAGATGATTAAGATAAAAGTATCCCCTC
ATGTGAGAGAAGACTCACTAAAATCTGAGGTTCAAGTTAATGAAGATGTTTATAATAAGGCTTTGGATTTTATTCAGGAA
ATGATAAATAAAATGGGGTATTATGTTGATTTAAAGATTGAATCTAGAGAAGGTGAGTATATTAAAATTTCTATTAAGAC
AGACAGTCCAAATATTTTAATTGGAAGAGAAGGAAGAAATTTGGATGCTTTGCAGCTTTTGGCAAATGTTTACGTATCTA
GACTTATTGGAGATAATGGTAATTTTAATAGAATAATATTAGATATTGAGGATTATAGAGAAAGATTCAAATCAAGATTT
ATTAATTTGGCAATAAATTCTTTACATAAGGTTAAAAGAAGTAGGCGTTCTATTCTTTTGCCGACAATGAATCCTTTTGA
GAGAAGAATTATTCATACTACTTTAAATCGTTATAATGATATTAAGACAGAGAGTGAGGGAGATGGAAATTTAAAGCGAG
TTAGAATTTCTTATGTTAGGAGTAGTAAATATAATAATAATTTTCGTAGTTATCAAAAAAGGGATGCTAATGTTAGGAAG
TAA

Upstream 100 bases:

>100_bases
ATATGCCATCAGGACTTTTAATCTATTGGATTACAACCAATATTTTTACTATTTTGCAACAATACTATATAAAGATGAAT
GTATCTGAAAGGAGGAACAG

Downstream 100 bases:

>100_bases
AATTTTGACTTCTAATGTTTGTAGGCCGATGATTTAACTTTAAATTTTGCTTAAGCTATAACAACTGATATTTAATTAGT
TGGTGCTTTATGGTTATAGG

Product: Jag protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSYEFYGKTEQEAIKKAMRDLDLKEGEFDVEILDKEKVGFLFKKEMIKIKVSPHVREDSLKSEVQVNEDVYNKALDFIQE
MINKMGYYVDLKIESREGEYIKISIKTDSPNILIGREGRNLDALQLLANVYVSRLIGDNGNFNRIILDIEDYRERFKSRF
INLAINSLHKVKRSRRSILLPTMNPFERRIIHTTLNRYNDIKTESEGDGNLKRVRISYVRSSKYNNNFRSYQKRDANVRK

Sequences:

>Translated_240_residues
MSYEFYGKTEQEAIKKAMRDLDLKEGEFDVEILDKEKVGFLFKKEMIKIKVSPHVREDSLKSEVQVNEDVYNKALDFIQE
MINKMGYYVDLKIESREGEYIKISIKTDSPNILIGREGRNLDALQLLANVYVSRLIGDNGNFNRIILDIEDYRERFKSRF
INLAINSLHKVKRSRRSILLPTMNPFERRIIHTTLNRYNDIKTESEGDGNLKRVRISYVRSSKYNNNFRSYQKRDANVRK
>Mature_239_residues
SYEFYGKTEQEAIKKAMRDLDLKEGEFDVEILDKEKVGFLFKKEMIKIKVSPHVREDSLKSEVQVNEDVYNKALDFIQEM
INKMGYYVDLKIESREGEYIKISIKTDSPNILIGREGRNLDALQLLANVYVSRLIGDNGNFNRIILDIEDYRERFKSRFI
NLAINSLHKVKRSRRSILLPTMNPFERRIIHTTLNRYNDIKTESEGDGNLKRVRISYVRSSKYNNNFRSYQKRDANVRK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 28375; Mature: 28244

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYEFYGKTEQEAIKKAMRDLDLKEGEFDVEILDKEKVGFLFKKEMIKIKVSPHVREDSL
CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHEEEEEEEEEECCCCCCHHH
KSEVQVNEDVYNKALDFIQEMINKMGYYVDLKIESREGEYIKISIKTDSPNILIGREGRN
HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECCCCEEEECCCCC
LDALQLLANVYVSRLIGDNGNFNRIILDIEDYRERFKSRFINLAINSLHKVKRSRRSILL
HHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEC
PTMNPFERRIIHTTLNRYNDIKTESEGDGNLKRVRISYVRSSKYNNNFRSYQKRDANVRK
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
SYEFYGKTEQEAIKKAMRDLDLKEGEFDVEILDKEKVGFLFKKEMIKIKVSPHVREDSL
CCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHEEEEEEEEEECCCCCCHHH
KSEVQVNEDVYNKALDFIQEMINKMGYYVDLKIESREGEYIKISIKTDSPNILIGREGRN
HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECCCCEEEECCCCC
LDALQLLANVYVSRLIGDNGNFNRIILDIEDYRERFKSRFINLAINSLHKVKRSRRSILL
HHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEC
PTMNPFERRIIHTTLNRYNDIKTESEGDGNLKRVRISYVRSSKYNNNFRSYQKRDANVRK
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]