Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736451
Identifier: 187736451
GI number: 187736451
Start: 2387544
End: 2388959
Strand: Reverse
Name: 187736451
Synonym: Amuc_1969
Alternate gene names: NA
Gene position: 2388959-2387544 (Counterclockwise)
Preceding gene: 187736456
Following gene: 187736449
Centisome position: 89.67
GC content: 58.83
Gene sequence:
>1416_bases ATGGACTTGATGAACGGGCTGCCACGCGTTAATCTAACGGCCATGAGATTGGCTACCCTGATCTGGCTGGCCGGCATTGC ATGCTGCGTGCCGGGCATGGCCGCCGAACCCCAGCAGAAGGAACAGACCGCCGCGGAAAAAGCGGACCGCCCCCGCCAGC AGGAGATATCCTTTCAATGCATCGCTCCGGTTCCCGGCTTGCCCGTTCCCATGGATTTGACGCAGGCGGACGGAATCCGG CTGAACGCGCTGGACGTTACTGTTTCCCTGAAGCAGCACCAGGCTTTCCTCATTTACACCTGCGCGCTGGATATTCCCAG GGGAATCAGGGGGAAAACCATTTCCGTAGGCGTGCCGTTCCAGTACGAACCGCCTGATGAACAGGCCAATGCCGCCAGGC AGGAACCCATACGCAGCCTCCCTTTTACGAAAGCGGTGCAGGACGTCGTCACATCCGTGGATGATCTGAAATGTGATTTT TCCCTGGTGGAGGGGCGGCATCTCCAGGCGGACGCTCCCTCCATGTTTCCCATTGCCGGCATAACTCACTGGCTGGTGGC CCAGGTTCCCAACAAGGCGGGAATCCATGTTCTTACCTTCCAGTTCTCCGTTCCTTATACGCAGGACGTTGCCATTACGC CGGAACCGAAGGTCCACATGGGGGAACCGCGCCTGACGCTGCTTACCTCTCCGGTAATAACCTGGACAGGGGGCACCCCC AGGGCGGTGGTCAATGTGTACAGCTCGGAGATGACCAACCAGTCCGTCAAGCTGGATCCCTCCGCGGATGCCAAATCCAT CATGACGACGCCCAAAGGCGTTTATACCTGGTCTTTGCTGGGAGCGGACGGCAGGCCCTACGCTCCCTCCTTGGTGCTTA CTCCGGGGCCCGGGTGGGTGCTGGACAAGGATGGGCGGATGACCGTCCGCGGAGAAAGGGGCGTCCTGACGGACCAGTAT GACGTGACTGCCAGCTCCACCCTGGACAGGGACCCCTACGGGGTTCCATGTTCCCCGGACAATCTGAAAAAAAGTTCCGG CTATTGGGCGGAAAGCGTTTCCGGGGACGGCCAGGGGGAAACCCTGGAGATCAGGCTCAGGAAACCCGGCCGGCTGCTGG GAATCATGCTGGAGACCGGCATTTCCCCGGTGACCGACCCGGAAAAGGATTCGGAAGCCCGGAGGCACCCGAATATTGCC TACTCCATGTTCAGCCGCCCCAAAGGCATTCAGGTGACGCTGAACGGAACTTATACTTTTGACGCCACGCTGCGGGATGA CTGGACTCCGCAGATTGTCGTGCCTCCGTATTACAGGCAGCCTGTGCACACCATCAAAATCAGGATTAATTCCATTTATC GCGGAACAGGGACATCGGACACCTACATCGGCATCCTCAAGCCGATTATACAATAA
Upstream 100 bases:
>100_bases GAATGTTTTCCTGCTGCGGGCGTCGCTGGTTCAAAGGAGGGCCGCCCTTGTTTGTTCAGGGAAAAGGGCGGGTACGAAGG GACCTTTCCCCCTCCCCTAA
Downstream 100 bases:
>100_bases AGAACTTTCCGGGGCTCTTTTTTCCGGAAGCGGGCGGGCCGTTTTGCGGGGATTCCGTCGGAAGCGGCGGGGCAGGGAAA AAAGATTCCCTTTCAATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 471
Protein sequence:
>471_residues MDLMNGLPRVNLTAMRLATLIWLAGIACCVPGMAAEPQQKEQTAAEKADRPRQQEISFQCIAPVPGLPVPMDLTQADGIR LNALDVTVSLKQHQAFLIYTCALDIPRGIRGKTISVGVPFQYEPPDEQANAARQEPIRSLPFTKAVQDVVTSVDDLKCDF SLVEGRHLQADAPSMFPIAGITHWLVAQVPNKAGIHVLTFQFSVPYTQDVAITPEPKVHMGEPRLTLLTSPVITWTGGTP RAVVNVYSSEMTNQSVKLDPSADAKSIMTTPKGVYTWSLLGADGRPYAPSLVLTPGPGWVLDKDGRMTVRGERGVLTDQY DVTASSTLDRDPYGVPCSPDNLKKSSGYWAESVSGDGQGETLEIRLRKPGRLLGIMLETGISPVTDPEKDSEARRHPNIA YSMFSRPKGIQVTLNGTYTFDATLRDDWTPQIVVPPYYRQPVHTIKIRINSIYRGTGTSDTYIGILKPIIQ
Sequences:
>Translated_471_residues MDLMNGLPRVNLTAMRLATLIWLAGIACCVPGMAAEPQQKEQTAAEKADRPRQQEISFQCIAPVPGLPVPMDLTQADGIR LNALDVTVSLKQHQAFLIYTCALDIPRGIRGKTISVGVPFQYEPPDEQANAARQEPIRSLPFTKAVQDVVTSVDDLKCDF SLVEGRHLQADAPSMFPIAGITHWLVAQVPNKAGIHVLTFQFSVPYTQDVAITPEPKVHMGEPRLTLLTSPVITWTGGTP RAVVNVYSSEMTNQSVKLDPSADAKSIMTTPKGVYTWSLLGADGRPYAPSLVLTPGPGWVLDKDGRMTVRGERGVLTDQY DVTASSTLDRDPYGVPCSPDNLKKSSGYWAESVSGDGQGETLEIRLRKPGRLLGIMLETGISPVTDPEKDSEARRHPNIA YSMFSRPKGIQVTLNGTYTFDATLRDDWTPQIVVPPYYRQPVHTIKIRINSIYRGTGTSDTYIGILKPIIQ >Mature_471_residues MDLMNGLPRVNLTAMRLATLIWLAGIACCVPGMAAEPQQKEQTAAEKADRPRQQEISFQCIAPVPGLPVPMDLTQADGIR LNALDVTVSLKQHQAFLIYTCALDIPRGIRGKTISVGVPFQYEPPDEQANAARQEPIRSLPFTKAVQDVVTSVDDLKCDF SLVEGRHLQADAPSMFPIAGITHWLVAQVPNKAGIHVLTFQFSVPYTQDVAITPEPKVHMGEPRLTLLTSPVITWTGGTP RAVVNVYSSEMTNQSVKLDPSADAKSIMTTPKGVYTWSLLGADGRPYAPSLVLTPGPGWVLDKDGRMTVRGERGVLTDQY DVTASSTLDRDPYGVPCSPDNLKKSSGYWAESVSGDGQGETLEIRLRKPGRLLGIMLETGISPVTDPEKDSEARRHPNIA YSMFSRPKGIQVTLNGTYTFDATLRDDWTPQIVVPPYYRQPVHTIKIRINSIYRGTGTSDTYIGILKPIIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51591; Mature: 51591
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLMNGLPRVNLTAMRLATLIWLAGIACCVPGMAAEPQQKEQTAAEKADRPRQQEISFQC CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHCCCEEE IAPVPGLPVPMDLTQADGIRLNALDVTVSLKQHQAFLIYTCALDIPRGIRGKTISVGVPF ECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEECCE QYEPPDEQANAARQEPIRSLPFTKAVQDVVTSVDDLKCDFSLVEGRHLQADAPSMFPIAG EECCCCHHHHHHHHCHHHCCCHHHHHHHHHCCHHHCCCCEEEECCCEECCCCCCCCCHHH ITHWLVAQVPNKAGIHVLTFQFSVPYTQDVAITPEPKVHMGEPRLTLLTSPVITWTGGTP HHHHHHHHCCCCCCEEEEEEEEECCCCCCEEECCCCCEECCCCCEEEEECCEEEECCCCC RAVVNVYSSEMTNQSVKLDPSADAKSIMTTPKGVYTWSLLGADGRPYAPSLVLTPGPGWV HHEEEEHHHHCCCCEEEECCCCCCHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCEE LDKDGRMTVRGERGVLTDQYDVTASSTLDRDPYGVPCSPDNLKKSSGYWAESVSGDGQGE ECCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC TLEIRLRKPGRLLGIMLETGISPVTDPEKDSEARRHPNIAYSMFSRPKGIQVTLNGTYTF EEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCEEEHHHCCCCCEEEEECCEEEE DATLRDDWTPQIVVPPYYRQPVHTIKIRINSIYRGTGTSDTYIGILKPIIQ EEEECCCCCCEEEECCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHCC >Mature Secondary Structure MDLMNGLPRVNLTAMRLATLIWLAGIACCVPGMAAEPQQKEQTAAEKADRPRQQEISFQC CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHCCCEEE IAPVPGLPVPMDLTQADGIRLNALDVTVSLKQHQAFLIYTCALDIPRGIRGKTISVGVPF ECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEECCE QYEPPDEQANAARQEPIRSLPFTKAVQDVVTSVDDLKCDFSLVEGRHLQADAPSMFPIAG EECCCCHHHHHHHHCHHHCCCHHHHHHHHHCCHHHCCCCEEEECCCEECCCCCCCCCHHH ITHWLVAQVPNKAGIHVLTFQFSVPYTQDVAITPEPKVHMGEPRLTLLTSPVITWTGGTP HHHHHHHHCCCCCCEEEEEEEEECCCCCCEEECCCCCEECCCCCEEEEECCEEEECCCCC RAVVNVYSSEMTNQSVKLDPSADAKSIMTTPKGVYTWSLLGADGRPYAPSLVLTPGPGWV HHEEEEHHHHCCCCEEEECCCCCCHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCEE LDKDGRMTVRGERGVLTDQYDVTASSTLDRDPYGVPCSPDNLKKSSGYWAESVSGDGQGE ECCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC TLEIRLRKPGRLLGIMLETGISPVTDPEKDSEARRHPNIAYSMFSRPKGIQVTLNGTYTF EEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCEEEHHHCCCCCEEEEECCEEEE DATLRDDWTPQIVVPPYYRQPVHTIKIRINSIYRGTGTSDTYIGILKPIIQ EEEECCCCCCEEEECCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA