Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ppdK [H]
Identifier: 187736456
GI number: 187736456
Start: 2396408
End: 2399152
Strand: Reverse
Name: ppdK [H]
Synonym: Amuc_1974
Alternate gene names: 187736456
Gene position: 2399152-2396408 (Counterclockwise)
Preceding gene: 187736457
Following gene: 187736451
Centisome position: 90.05
GC content: 59.6
Gene sequence:
>2745_bases ATGTCCACCAATTCCTGCGCGTGTAGCGCATCTACTGACAAATTCGTCTATTCTTTCGGCGGAGGGTCCGCCGACGGCAA TGGCAGCATGAAAAATCTTTTGGGCGGCAAGGGCGCCAACCTTGCGGAAATGGCCCGTATCGGCCTTCCTGTCCCTCCCG GATTCACCATCACTACGGAAGTTTGCACTTACTACTACGATCACGGCTGCACTTATCCCGCCCAGCTTGACGCGCAGGTC AAGGAAGGCATTGCCAAAATGGAACAGATCCTGGGACGCAAGTTCGGCGATACGGAAGCTATGCCCCTGCTGGTGGCCGT GCGTTCCGGCGCCCGTGAATCCATGCCCGGCATGATGGACACGATTTTGAACCTCGGCCTGAATGAAAAATCCGTGGAAG CCATGGTGAAGGCTACGAACAACCCCCGCTTCGCCTGGGACTGCTACCGCCGCTTCGTGCAGATGTACGGCGACGTGGTG CTGGGTGTGCAGAAAACCCCGGATGAAGACCACGAACCCTTTGAAACCGCCATCGCTGCCATCAAGAAAGAACGCTTTGG CAGCGAGGACGTGGAAGACACCAAGCTCTCTGCCGATGACCTGAAGGAACTTGTCTCCCGCTTCAAGGCCCTGGTGCTGG AACGCACCGGCCATGAATTCCCGGAATGCCCCTGGGAACAGCTTCAGGGAGCCATTGGCGCCGTGTTCGGTTCCTGGAAC AATGACCGCGCCATCGTGTACCGCCAGAAATACGGCATTCCGTCCGAATGGGGCACCGCCGTCAACGTGCAGGCCATGGT CTTCGGCAACACGGGTGAGGAATCCGGTTCCGGCGTGGCGTTCACCCGCAACCCCGCCTCCGGCGAAAACGAATTCTATG GCGAATTCCTGATGAACGCCCAGGGTGAAGACGTCGTGGCCGGCGTGCGTACGCCCGCCCCCGTTGCTGCCCTTCATGAA GTGATGCCCGCCGCCTTCAATGAACTGGTGCGCATTCGCGAAGTGCTGGAAAACCACTTCCATGACATGCAGGACTTTGA ATTCACCATTCAGGACCGCACCGTCTACATGCTCCAGACCCGCAACGGAAAGCGCACCGGCGTGGCCGCTTTCCGCATTG CCTGTGAAATGGTGGAACAGGGCCTGATTGACTGGAAAACCGCCGTGCGCCGCATTCCTGCGGACCAGGTGGACCAGCTG CTGACCCCCATCTTTGACCGTGAAGCCATCAAGAGTGCCAAGGTTCTGACCCGCGGTCTTCCCGCCGGGCCCGGCGCCGC CACCGGACGCATCTACCTGAACGCGGAACGCTGTGTGGAAGCCGCGGATAGAGGTGAAAAGGTTCTGCTGGTCCGTCTGG AAACCTCTCCGGAAGACCTGCGCGGCATGATTGCCGCTGAAGGCATCCTGACCGCCCGCGGCGGCGTTTCCTCCCATGCC GCCCTCGTTGCCCGCCAGATGGGCAAAGTCTGCGTTTGCGGCGCGGATGAAATCATTGTGGACTACAACAACCGCACCGT TTCCGTTGGCGACGTAACCATCAGCGAAGGTGACTACCTCTCCATTGACGGAACGAGCGGCCTGGTATACGCCGGCAAGG TGGAAACTTCCCCCTCTGAAATCATCCAGGTCCTGATTTCCAAGACCATGAAGCCGGAAGACAGCCGCACCTACCAGAAC TTCGCCAAGCTCATGCAGTGGTGCGACGACTGTACCAAAATGAAAGTGCGCACCAATGCGGACTCTCCCAAGCAGACGGA AACCGCCATCGCCTTCGGCGCCACCGGCATCGGCCTCTGCCGCACGGAACACATGTTCTTTGAAGGGGACCGGATCGACT TCGTCCGTGAAATGATCCTCTCCACCAAGAAGAGCGACCGCGTAGCCGCCGTTTCCAAGCTCCTTCCCTACCAGAAGGGG GACTTCAAGGGCATCTTCAAGGCGCTCAAGGGCCTGCCGGGCACCATCCGCCTTCTGGACCCGCCCCTGCACGAATTCCT TCCCCAGACGAAGGAACAGCAGCTTGACCTGGCCCAGAAAATCGGCATGCCTGTGGAAGTTATCATGCGCCGCGTGTCCG AACTCCATGAGTTCAACCCGATGCTCGGCCACCGCGGCTGCCGTCTCGGCATCGCCTATCCGGAAATCACGGAAATGCAG GCCCGCGCCATCTTTGAAGCCGCTGTGGAAGTCTCCCAGGAAGAAGGATTTGCCGTGGTGCCTGAAATCATGGTTCCTCT GGTGGCCTTCAAGAAGGAACTGGACATCCAGAAAGCCATCATTGACAAGGTGGCCCAGCAGGTATTTGAGGAAAAAGGCG TCAAAGTGGACTACCTCGTCGGCACCATGATTGAAATCCCGCGCGCTGCCGTCACGGCTGACGAAATCGCGGAAACCGCC CAGTTCTTCTCCTTCGGCACCAATGACCTGACCCAGACGGGCCTGGGCATGAGCCGCGACGACTCCGGCTCCTTCCTGCC GCAGTACCAGGAACTGGAAATCATCAAGAAGAACGTCTTCGCTTCCATTGACCAGAACGGCGTCGGCAAGCTGATGAAGA TTGCCGTGGAACTCGGCCGCTCCACCCGCCCGGACATCAAACTGGGCATCTGCGGCGAACACGGCGGCGACCCCGCTTCC GTCAAGTTCTGCAACACGCTGGGCCTGACTTATGTGAGCTGCTCGCCCTACCGCGTCCCGACCGCCCGTCTGGCCGCGGC CCAGGCTGCTCTGGAACAGGAATAA
Upstream 100 bases:
>100_bases CGAAGGCATCCTTATTCGACCCTAACTCGCTATTGGGTCTTTTGTTGGCTCCTTTGGTCGATGTTTGGGCAGAATCATTA ATTCGACTACAATAATCGAT
Downstream 100 bases:
>100_bases ACCTTTTTGTTAAGGGTTAATAAACAGCCCGTGGTTCTTCGGAACCACGGGCTGTTTTAGCGGATGGAACGGTCTTGTCA GATATGGCTTGAACCTTGCG
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 914; Mature: 913
Protein sequence:
>914_residues MSTNSCACSASTDKFVYSFGGGSADGNGSMKNLLGGKGANLAEMARIGLPVPPGFTITTEVCTYYYDHGCTYPAQLDAQV KEGIAKMEQILGRKFGDTEAMPLLVAVRSGARESMPGMMDTILNLGLNEKSVEAMVKATNNPRFAWDCYRRFVQMYGDVV LGVQKTPDEDHEPFETAIAAIKKERFGSEDVEDTKLSADDLKELVSRFKALVLERTGHEFPECPWEQLQGAIGAVFGSWN NDRAIVYRQKYGIPSEWGTAVNVQAMVFGNTGEESGSGVAFTRNPASGENEFYGEFLMNAQGEDVVAGVRTPAPVAALHE VMPAAFNELVRIREVLENHFHDMQDFEFTIQDRTVYMLQTRNGKRTGVAAFRIACEMVEQGLIDWKTAVRRIPADQVDQL LTPIFDREAIKSAKVLTRGLPAGPGAATGRIYLNAERCVEAADRGEKVLLVRLETSPEDLRGMIAAEGILTARGGVSSHA ALVARQMGKVCVCGADEIIVDYNNRTVSVGDVTISEGDYLSIDGTSGLVYAGKVETSPSEIIQVLISKTMKPEDSRTYQN FAKLMQWCDDCTKMKVRTNADSPKQTETAIAFGATGIGLCRTEHMFFEGDRIDFVREMILSTKKSDRVAAVSKLLPYQKG DFKGIFKALKGLPGTIRLLDPPLHEFLPQTKEQQLDLAQKIGMPVEVIMRRVSELHEFNPMLGHRGCRLGIAYPEITEMQ ARAIFEAAVEVSQEEGFAVVPEIMVPLVAFKKELDIQKAIIDKVAQQVFEEKGVKVDYLVGTMIEIPRAAVTADEIAETA QFFSFGTNDLTQTGLGMSRDDSGSFLPQYQELEIIKKNVFASIDQNGVGKLMKIAVELGRSTRPDIKLGICGEHGGDPAS VKFCNTLGLTYVSCSPYRVPTARLAAAQAALEQE
Sequences:
>Translated_914_residues MSTNSCACSASTDKFVYSFGGGSADGNGSMKNLLGGKGANLAEMARIGLPVPPGFTITTEVCTYYYDHGCTYPAQLDAQV KEGIAKMEQILGRKFGDTEAMPLLVAVRSGARESMPGMMDTILNLGLNEKSVEAMVKATNNPRFAWDCYRRFVQMYGDVV LGVQKTPDEDHEPFETAIAAIKKERFGSEDVEDTKLSADDLKELVSRFKALVLERTGHEFPECPWEQLQGAIGAVFGSWN NDRAIVYRQKYGIPSEWGTAVNVQAMVFGNTGEESGSGVAFTRNPASGENEFYGEFLMNAQGEDVVAGVRTPAPVAALHE VMPAAFNELVRIREVLENHFHDMQDFEFTIQDRTVYMLQTRNGKRTGVAAFRIACEMVEQGLIDWKTAVRRIPADQVDQL LTPIFDREAIKSAKVLTRGLPAGPGAATGRIYLNAERCVEAADRGEKVLLVRLETSPEDLRGMIAAEGILTARGGVSSHA ALVARQMGKVCVCGADEIIVDYNNRTVSVGDVTISEGDYLSIDGTSGLVYAGKVETSPSEIIQVLISKTMKPEDSRTYQN FAKLMQWCDDCTKMKVRTNADSPKQTETAIAFGATGIGLCRTEHMFFEGDRIDFVREMILSTKKSDRVAAVSKLLPYQKG DFKGIFKALKGLPGTIRLLDPPLHEFLPQTKEQQLDLAQKIGMPVEVIMRRVSELHEFNPMLGHRGCRLGIAYPEITEMQ ARAIFEAAVEVSQEEGFAVVPEIMVPLVAFKKELDIQKAIIDKVAQQVFEEKGVKVDYLVGTMIEIPRAAVTADEIAETA QFFSFGTNDLTQTGLGMSRDDSGSFLPQYQELEIIKKNVFASIDQNGVGKLMKIAVELGRSTRPDIKLGICGEHGGDPAS VKFCNTLGLTYVSCSPYRVPTARLAAAQAALEQE >Mature_913_residues STNSCACSASTDKFVYSFGGGSADGNGSMKNLLGGKGANLAEMARIGLPVPPGFTITTEVCTYYYDHGCTYPAQLDAQVK EGIAKMEQILGRKFGDTEAMPLLVAVRSGARESMPGMMDTILNLGLNEKSVEAMVKATNNPRFAWDCYRRFVQMYGDVVL GVQKTPDEDHEPFETAIAAIKKERFGSEDVEDTKLSADDLKELVSRFKALVLERTGHEFPECPWEQLQGAIGAVFGSWNN DRAIVYRQKYGIPSEWGTAVNVQAMVFGNTGEESGSGVAFTRNPASGENEFYGEFLMNAQGEDVVAGVRTPAPVAALHEV MPAAFNELVRIREVLENHFHDMQDFEFTIQDRTVYMLQTRNGKRTGVAAFRIACEMVEQGLIDWKTAVRRIPADQVDQLL TPIFDREAIKSAKVLTRGLPAGPGAATGRIYLNAERCVEAADRGEKVLLVRLETSPEDLRGMIAAEGILTARGGVSSHAA LVARQMGKVCVCGADEIIVDYNNRTVSVGDVTISEGDYLSIDGTSGLVYAGKVETSPSEIIQVLISKTMKPEDSRTYQNF AKLMQWCDDCTKMKVRTNADSPKQTETAIAFGATGIGLCRTEHMFFEGDRIDFVREMILSTKKSDRVAAVSKLLPYQKGD FKGIFKALKGLPGTIRLLDPPLHEFLPQTKEQQLDLAQKIGMPVEVIMRRVSELHEFNPMLGHRGCRLGIAYPEITEMQA RAIFEAAVEVSQEEGFAVVPEIMVPLVAFKKELDIQKAIIDKVAQQVFEEKGVKVDYLVGTMIEIPRAAVTADEIAETAQ FFSFGTNDLTQTGLGMSRDDSGSFLPQYQELEIIKKNVFASIDQNGVGKLMKIAVELGRSTRPDIKLGICGEHGGDPASV KFCNTLGLTYVSCSPYRVPTARLAAAQAALEQE
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1789193, Length=441, Percent_Identity=26.0770975056689, Blast_Score=105, Evalue=2e-23, Organism=Escherichia coli, GI1788756, Length=465, Percent_Identity=25.1612903225806, Blast_Score=89, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 100127; Mature: 99995
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTNSCACSASTDKFVYSFGGGSADGNGSMKNLLGGKGANLAEMARIGLPVPPGFTITTE CCCCCCEECCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCEEHHH VCTYYYDHGCTYPAQLDAQVKEGIAKMEQILGRKFGDTEAMPLLVAVRSGARESMPGMMD HHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHEEECCCCHHCCCHHHH TILNLGLNEKSVEAMVKATNNPRFAWDCYRRFVQMYGDVVLGVQKTPDEDHEPFETAIAA HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHH IKKERFGSEDVEDTKLSADDLKELVSRFKALVLERTGHEFPECPWEQLQGAIGAVFGSWN HHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC NDRAIVYRQKYGIPSEWGTAVNVQAMVFGNTGEESGSGVAFTRNPASGENEFYGEFLMNA CCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHCC QGEDVVAGVRTPAPVAALHEVMPAAFNELVRIREVLENHFHDMQDFEFTIQDRTVYMLQT CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEE RNGKRTGVAAFRIACEMVEQGLIDWKTAVRRIPADQVDQLLTPIFDREAIKSAKVLTRGL CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC PAGPGAATGRIYLNAERCVEAADRGEKVLLVRLETSPEDLRGMIAAEGILTARGGVSSHA CCCCCCCCCEEEEEHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCEEEECCCCCHHH ALVARQMGKVCVCGADEIIVDYNNRTVSVGDVTISEGDYLSIDGTSGLVYAGKVETSPSE HHHHHHHCCEEEECCCEEEEEECCCEEEECEEEECCCCEEEEECCCCEEEEEECCCCHHH IIQVLISKTMKPEDSRTYQNFAKLMQWCDDCTKMKVRTNADSPKQTETAIAFGATGIGLC HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHEEEECCCCCCHH RTEHMFFEGDRIDFVREMILSTKKSDRVAAVSKLLPYQKGDFKGIFKALKGLPGTIRLLD EECCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEECC PPLHEFLPQTKEQQLDLAQKIGMPVEVIMRRVSELHEFNPMLGHRGCRLGIAYPEITEMQ CCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCEEECCCCCHHHHH ARAIFEAAVEVSQEEGFAVVPEIMVPLVAFKKELDIQKAIIDKVAQQVFEEKGVKVDYLV HHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH GTMIEIPRAAVTADEIAETAQFFSFGTNDLTQTGLGMSRDDSGSFLPQYQELEIIKKNVF HHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH ASIDQNGVGKLMKIAVELGRSTRPDIKLGICGEHGGDPASVKFCNTLGLTYVSCSPYRVP HHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEHHCCCEEEECCCCCCC TARLAAAQAALEQE HHHHHHHHHHHCCC >Mature Secondary Structure STNSCACSASTDKFVYSFGGGSADGNGSMKNLLGGKGANLAEMARIGLPVPPGFTITTE CCCCCEECCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCEEHHH VCTYYYDHGCTYPAQLDAQVKEGIAKMEQILGRKFGDTEAMPLLVAVRSGARESMPGMMD HHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHEEECCCCHHCCCHHHH TILNLGLNEKSVEAMVKATNNPRFAWDCYRRFVQMYGDVVLGVQKTPDEDHEPFETAIAA HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHH IKKERFGSEDVEDTKLSADDLKELVSRFKALVLERTGHEFPECPWEQLQGAIGAVFGSWN HHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC NDRAIVYRQKYGIPSEWGTAVNVQAMVFGNTGEESGSGVAFTRNPASGENEFYGEFLMNA CCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHCC QGEDVVAGVRTPAPVAALHEVMPAAFNELVRIREVLENHFHDMQDFEFTIQDRTVYMLQT CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEE RNGKRTGVAAFRIACEMVEQGLIDWKTAVRRIPADQVDQLLTPIFDREAIKSAKVLTRGL CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC PAGPGAATGRIYLNAERCVEAADRGEKVLLVRLETSPEDLRGMIAAEGILTARGGVSSHA CCCCCCCCCEEEEEHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCEEEECCCCCHHH ALVARQMGKVCVCGADEIIVDYNNRTVSVGDVTISEGDYLSIDGTSGLVYAGKVETSPSE HHHHHHHCCEEEECCCEEEEEECCCEEEECEEEECCCCEEEEECCCCEEEEEECCCCHHH IIQVLISKTMKPEDSRTYQNFAKLMQWCDDCTKMKVRTNADSPKQTETAIAFGATGIGLC HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHEEEECCCCCCHH RTEHMFFEGDRIDFVREMILSTKKSDRVAAVSKLLPYQKGDFKGIFKALKGLPGTIRLLD EECCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEECC PPLHEFLPQTKEQQLDLAQKIGMPVEVIMRRVSELHEFNPMLGHRGCRLGIAYPEITEMQ CCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCEEECCCCCHHHHH ARAIFEAAVEVSQEEGFAVVPEIMVPLVAFKKELDIQKAIIDKVAQQVFEEKGVKVDYLV HHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH GTMIEIPRAAVTADEIAETAQFFSFGTNDLTQTGLGMSRDDSGSFLPQYQELEIIKKNVF HHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH ASIDQNGVGKLMKIAVELGRSTRPDIKLGICGEHGGDPASVKFCNTLGLTYVSCSPYRVP HHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEHHCCCEEEECCCCCCC TARLAAAQAALEQE HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]