Click here to switch to the map view.

The map label for this gene is ywaF [H]

Identifier: 187736434

GI number: 187736434

Start: 2370204

End: 2370908

Strand: Reverse

Name: ywaF [H]

Synonym: Amuc_1952

Alternate gene names: 187736434

Gene position: 2370908-2370204 (Counterclockwise)

Preceding gene: 187736435

Following gene: 187736431

Centisome position: 88.99

GC content: 57.02

Gene sequence:

>705_bases
ATGGATTTTTTTATGACCGGAGAAATTGCGCCCCTGTTTGTCCGTTGGAGCCTGCCGCACTGGGCTGCCCTGGGCATCGT
GGCGCTGGCAGCAGGGGGGCTCCTGTGGGGATGCCGGCGGCTCCGGATGGAGAGCCGTTTGCTTGTGGGAAAGGTTCTGG
GAAGCTTTTTCCTGCTGACTTTCCTGATGGAAACATTCGGCCGCATCGTCAGAGAACATTGGGAGCCCTGGCAGGACAGG
CTTCCGCTGCATTTTTGCAGTCTGATGGCTCTGGTCTGTTTTATCGCCCTGTGGTTCCGTACACCCTGGGCATGCGCCGT
GGCGTATTTCGGCGTGCTGACGGCAAGCGTCCAGGGATTGATTACCCCCATGCTTCACGACGGTTTCCCCTCCGTCGCCT
TTTTCGCCTTTTTCATCGGGCATGGGCTTTTATTGATTTCCGCTCTTTACCTTCCCGCCGTCCTGCAATGGCGTGCGCGG
CCGTGGGATGACATGCGGGCGCTGGGTTTGTGCGACGCCTACCTGGTTTGTATTATTCCGGTGAATATCTGGCTGGATAC
GAATTACGGTTTTACCCGGTATGCTCCGGCAGGGACCGTACTGGAATATTTCGGGCCCGCTCCGTGGTATTTCCTGACGC
TTCAGATTCCGGCACTGGCTCTTTTGCGGCTGTTGTACCTGACTGTCCGCGTCAGGAAGAAATAA

Upstream 100 bases:

>100_bases
TTACCCCCGGCATGGTCCGTTCCGTATGTGTTCTGCGTCTTAAGGTGGAGGCCGTCAGCGCCAAACTTCATGCGTGCCCG
GAACCTCCTCCTTCCCGTTG

Downstream 100 bases:

>100_bases
AAGAATCTCCTCTGCGGGAATGATGATTGCTGAGGAAACGGGGAAAGAAGACGGCTCCTCCGTTTTGGAGCGGCCTGGCG
TTTTTGCCCCTCCCGGCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MDFFMTGEIAPLFVRWSLPHWAALGIVALAAGGLLWGCRRLRMESRLLVGKVLGSFFLLTFLMETFGRIVREHWEPWQDR
LPLHFCSLMALVCFIALWFRTPWACAVAYFGVLTASVQGLITPMLHDGFPSVAFFAFFIGHGLLLISALYLPAVLQWRAR
PWDDMRALGLCDAYLVCIIPVNIWLDTNYGFTRYAPAGTVLEYFGPAPWYFLTLQIPALALLRLLYLTVRVRKK

Sequences:

>Translated_234_residues
MDFFMTGEIAPLFVRWSLPHWAALGIVALAAGGLLWGCRRLRMESRLLVGKVLGSFFLLTFLMETFGRIVREHWEPWQDR
LPLHFCSLMALVCFIALWFRTPWACAVAYFGVLTASVQGLITPMLHDGFPSVAFFAFFIGHGLLLISALYLPAVLQWRAR
PWDDMRALGLCDAYLVCIIPVNIWLDTNYGFTRYAPAGTVLEYFGPAPWYFLTLQIPALALLRLLYLTVRVRKK
>Mature_234_residues
MDFFMTGEIAPLFVRWSLPHWAALGIVALAAGGLLWGCRRLRMESRLLVGKVLGSFFLLTFLMETFGRIVREHWEPWQDR
LPLHFCSLMALVCFIALWFRTPWACAVAYFGVLTASVQGLITPMLHDGFPSVAFFAFFIGHGLLLISALYLPAVLQWRAR
PWDDMRALGLCDAYLVCIIPVNIWLDTNYGFTRYAPAGTVLEYFGPAPWYFLTLQIPALALLRLLYLTVRVRKK

Specific function: Unknown

COG id: COG5522

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011737 [H]

Pfam domain/function: PF09529 Intg_mem_TP0381 [H]

EC number: NA

Molecular weight: Translated: 26710; Mature: 26710

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFFMTGEIAPLFVRWSLPHWAALGIVALAAGGLLWGCRRLRMESRLLVGKVLGSFFLLT
CCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLMETFGRIVREHWEPWQDRLPLHFCSLMALVCFIALWFRTPWACAVAYFGVLTASVQGL
HHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ITPMLHDGFPSVAFFAFFIGHGLLLISALYLPAVLQWRARPWDDMRALGLCDAYLVCIIP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEE
VNIWLDTNYGFTRYAPAGTVLEYFGPAPWYFLTLQIPALALLRLLYLTVRVRKK
HEEEEECCCCCEEECCCHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDFFMTGEIAPLFVRWSLPHWAALGIVALAAGGLLWGCRRLRMESRLLVGKVLGSFFLLT
CCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLMETFGRIVREHWEPWQDRLPLHFCSLMALVCFIALWFRTPWACAVAYFGVLTASVQGL
HHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ITPMLHDGFPSVAFFAFFIGHGLLLISALYLPAVLQWRARPWDDMRALGLCDAYLVCIIP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEE
VNIWLDTNYGFTRYAPAGTVLEYFGPAPWYFLTLQIPALALLRLLYLTVRVRKK
HEEEEECCCCCEEECCCHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1806041; 7934828; 9384377 [H]