Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is yiaH [C]
Identifier: 187736362
GI number: 187736362
Start: 2284094
End: 2285215
Strand: Direct
Name: yiaH [C]
Synonym: Amuc_1879
Alternate gene names: 187736362
Gene position: 2284094-2285215 (Clockwise)
Preceding gene: 187736359
Following gene: 187736366
Centisome position: 85.74
GC content: 56.77
Gene sequence:
>1122_bases ATGAATCTTCCTTCCTCCCGCATTCCCTGGCTGGACAATATCCGTGTTTTTGCCTGTATTCTCGTTATTGCCAGCCACAT CGTGGGGCAGTTTTTTGTGTCGCCTCCTTTCACTCCGGACAATGAAACCTTTGCCTGGTCCTCCTTTTATACGGTGCTGG TGCGGGTCTCCATCCCCCTGTTTTTCATGATTTCCGGCGCCCTCCTGCTGCCCGTTCGGGATACGACGGGGCAATTCCTG AAAAAACGCTTCACCCGCGTCCTGTTCCCCTTCCTGCTGTGGTCTGCGTTTTACACTGTTTTTCCGTGGAGCTATGAAAC GCTCACGGGGAACAGCTTTCACTCCGTCTTCCCCCTCTCACAGGTCACGCCGGACCTGGAAACCATGGGAACGAACCTGC TGCTGATTCCACTGAAATTCAGCGTGGGCATTCATCTCTGGTACCTCTACGTGCTGATGGGCCTTTACCTCTTCCTGCCA GTAATATCCCCCTGGGTGGAGAAAGCGGGAAAGGCGGCCTTTGCCTACTTCCTGCTGCTGTGGGCGCTCACCCTCTTGTT CCCTTATCTCCAGACCATTTTCCCCAGCTATCTGGGAAAATGTCCCTGGAATGAATACGGGGCCCTGCATTCCTTCTCCG GGTACCTGGGCTACATGGTGCTCGGCTGCTTTCTGAGGAAATACCCTGGGAATGCCTCCTTCGCCCGCACGGCCTGCTGG GCCGTTCCGTGTCTGGCCGCGGCCTTTTGGTTTACCCTCCATTTCTACCGGACGTCCACGGCTCAGGCCTGGTCCTCAAG CGGCGACTACATCGGCTTCGCCAGCATTAATGTGGCCCTCATGTCCGTAGCCTTCTTCGTTCTCTTCCAGTCACTTCCCG CGTTCAGAGCCGGGTCCGCGCCGCAGCGGTTCCTGGCTGATTTCTCCAGCATGAGTTTCGGCATCTACCTGGTCCACTTT GTGCTGGTGGGAGCCGTTTACCGCCTCTTTGGCATGCTCCATCTGTTGTTCCTTCCGGCTTCTCTTTCCATTCCGCTGCT GACTGCGGCGACGTGCCTGGCAGCCTGGGGAATCATCAAGCTGCTCTCCTTCCTCCCCGGCAGCAGGTACCTGATCGGAT AA
Upstream 100 bases:
>100_bases GGAGCCTCCGCCAGGAAAATGTGTTTTTCCCGGTTTTGTTAACGTCTGGTTTTATGGTGAAAGAAACGGAGCCGTCCGCA GGTAGTTAAGGAACCTTTTC
Downstream 100 bases:
>100_bases ATTCCGGCATGGAGACAAAAAACTGCCCTCCGCATCGTGTGGCGGGAGGGCAGTCCGGATGGAAAAAGCGGGAAAAACAG GGATCAGCTCAGGGTTTCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MNLPSSRIPWLDNIRVFACILVIASHIVGQFFVSPPFTPDNETFAWSSFYTVLVRVSIPLFFMISGALLLPVRDTTGQFL KKRFTRVLFPFLLWSAFYTVFPWSYETLTGNSFHSVFPLSQVTPDLETMGTNLLLIPLKFSVGIHLWYLYVLMGLYLFLP VISPWVEKAGKAAFAYFLLLWALTLLFPYLQTIFPSYLGKCPWNEYGALHSFSGYLGYMVLGCFLRKYPGNASFARTACW AVPCLAAAFWFTLHFYRTSTAQAWSSSGDYIGFASINVALMSVAFFVLFQSLPAFRAGSAPQRFLADFSSMSFGIYLVHF VLVGAVYRLFGMLHLLFLPASLSIPLLTAATCLAAWGIIKLLSFLPGSRYLIG
Sequences:
>Translated_373_residues MNLPSSRIPWLDNIRVFACILVIASHIVGQFFVSPPFTPDNETFAWSSFYTVLVRVSIPLFFMISGALLLPVRDTTGQFL KKRFTRVLFPFLLWSAFYTVFPWSYETLTGNSFHSVFPLSQVTPDLETMGTNLLLIPLKFSVGIHLWYLYVLMGLYLFLP VISPWVEKAGKAAFAYFLLLWALTLLFPYLQTIFPSYLGKCPWNEYGALHSFSGYLGYMVLGCFLRKYPGNASFARTACW AVPCLAAAFWFTLHFYRTSTAQAWSSSGDYIGFASINVALMSVAFFVLFQSLPAFRAGSAPQRFLADFSSMSFGIYLVHF VLVGAVYRLFGMLHLLFLPASLSIPLLTAATCLAAWGIIKLLSFLPGSRYLIG >Mature_373_residues MNLPSSRIPWLDNIRVFACILVIASHIVGQFFVSPPFTPDNETFAWSSFYTVLVRVSIPLFFMISGALLLPVRDTTGQFL KKRFTRVLFPFLLWSAFYTVFPWSYETLTGNSFHSVFPLSQVTPDLETMGTNLLLIPLKFSVGIHLWYLYVLMGLYLFLP VISPWVEKAGKAAFAYFLLLWALTLLFPYLQTIFPSYLGKCPWNEYGALHSFSGYLGYMVLGCFLRKYPGNASFARTACW AVPCLAAAFWFTLHFYRTSTAQAWSSSGDYIGFASINVALMSVAFFVLFQSLPAFRAGSAPQRFLADFSSMSFGIYLVHF VLVGAVYRLFGMLHLLFLPASLSIPLLTAATCLAAWGIIKLLSFLPGSRYLIG
Specific function: Unknown
COG id: COG3274
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41957; Mature: 41957
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLPSSRIPWLDNIRVFACILVIASHIVGQFFVSPPFTPDNETFAWSSFYTVLVRVSIPL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHH FFMISGALLLPVRDTTGQFLKKRFTRVLFPFLLWSAFYTVFPWSYETLTGNSFHSVFPLS HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHCCCHH QVTPDLETMGTNLLLIPLKFSVGIHLWYLYVLMGLYLFLPVISPWVEKAGKAAFAYFLLL HCCCCHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WALTLLFPYLQTIFPSYLGKCPWNEYGALHSFSGYLGYMVLGCFLRKYPGNASFARTACW HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH AVPCLAAAFWFTLHFYRTSTAQAWSSSGDYIGFASINVALMSVAFFVLFQSLPAFRAGSA HHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCC PQRFLADFSSMSFGIYLVHFVLVGAVYRLFGMLHLLFLPASLSIPLLTAATCLAAWGIIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LLSFLPGSRYLIG HHHHCCCCCCCCC >Mature Secondary Structure MNLPSSRIPWLDNIRVFACILVIASHIVGQFFVSPPFTPDNETFAWSSFYTVLVRVSIPL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHH FFMISGALLLPVRDTTGQFLKKRFTRVLFPFLLWSAFYTVFPWSYETLTGNSFHSVFPLS HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHCCCHH QVTPDLETMGTNLLLIPLKFSVGIHLWYLYVLMGLYLFLPVISPWVEKAGKAAFAYFLLL HCCCCHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WALTLLFPYLQTIFPSYLGKCPWNEYGALHSFSGYLGYMVLGCFLRKYPGNASFARTACW HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH AVPCLAAAFWFTLHFYRTSTAQAWSSSGDYIGFASINVALMSVAFFVLFQSLPAFRAGSA HHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCC PQRFLADFSSMSFGIYLVHFVLVGAVYRLFGMLHLLFLPASLSIPLLTAATCLAAWGIIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LLSFLPGSRYLIG HHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA