Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736355
Identifier: 187736355
GI number: 187736355
Start: 2276934
End: 2278280
Strand: Direct
Name: 187736355
Synonym: Amuc_1872
Alternate gene names: NA
Gene position: 2276934-2278280 (Clockwise)
Preceding gene: 187736353
Following gene: 187736356
Centisome position: 85.47
GC content: 60.28
Gene sequence:
>1347_bases ATGCAGATAATGAACAGACCAGCACCATCAGTCCCCACCGCCGATATTCCGGTAGAGGCCATGCTGGCAGAGGTGCGGAA GCCGCTGGGACCCGTTTGGTGGAGCGTGTTTCTCGCCAGCGCATTGCTGGCGGCGTGGGGCATAGGGTGGAGTTCCTGGC GCATTGCCGCAGAGGGTGTGGGCGTGCTGGGGGTGAATAATAACGTGGTGTGGGGGCTGGACATCGTGCATTTTGTTTTC TGGATAGGCCTGGGGCATGCGGGCACCCTGATTTCCGCCGTCCTGCTGCTGACGCGCCAGTCATGGAGAAGCCCGATTGC GCGCGGAGCGGAACAGATGACCCTGTGCGCGGTTATCTGCGCCGCCGTTTTCCCTGTGGTGCACGTAGGGCGTGTCTGGA TGGCGTGGATGGCTTCCCCGTTGCCGGAAGTGAGCGGAATTTGGCCGGACATGGCCTCTCCTTTGATGTGGGATGTCATG GCAGTCAGCACCTATTTTCTTCTTTCCCTGTTGTACTGGTATATCGGCCTGGTGCCGGATTTCGCGTTGCTGAGGGATTG CTGCAAGGGGCGTCTGAGGCGCCGGTACGGGTGGCTGGCGCTGGGCTGGCAGGGAACGGGGCGCCAGTGGCGCGCCTATG AAAAGGCCAGCCTTCTTTTTGCGGTTATTCTGACTCCTCTCGTGGTATCCGTTCATTCCGTGGTGAGTTTCGATTTTTCC GTGACTCAGGTGCCGGGGTGGCACCAGAGCATTTTCCCGCCCTATTTCGTAGGGGGGGCCATCCTCAGCGGCATGGCGAT GGTTCAGCTGATTCTGCTGGGGGTGAGACGTCTGATGGCCGGCAGCGGCGTTCGCCGGGCCGTTACTCCGGCCATTCTGG ATTTAAGTTCCCGGTTTGTGCTGGCCCTGAGCCTGGTGATGGGAGCCATGTATTTGTGGGAGCATCTGGCAGCCATTCTG AATGGAGGCTCTCCGGAGCCGTTTCCGGGCAGAAATCCTGTGAATGCCGTGTTCCTCATCGTCATGGTTGCCGGGAATGT GGCGCTGCCCCAGTTGTTCTGGTTCCGTTCTCTGCGAACCAACCGCTGGGTGATCGCCGCCGTGGCTCTGGGAGTGCTTG CGGGCATGTGGATGGAACGTTTCTGGATTGTCGTGAATTCCCTGAAGGCATCCCTGCTGGCTGCCAACATCGGAGAGTAT TTCCCCAGCGTGACGGATTTGGCCATGATGGCCGGGAGCGTGGGGCTGTTTATGGCCCTGTACATGGCGCTGGTGCGTGT GGCTCCGTTCTTCTCCCTGTGCGACGTGCGGGAACAGCAATCCCTGAACAAGGAGGGCGGGGCATGA
Upstream 100 bases:
>100_bases CGCCCCTGTTTCCTGGAGCCGTGCGCCATGTCACGTGCGTTCCCCTTTTGAAATTGACGGGGAAAAGCACTCAAGTAAGC TTTAAAGAGCTTCCGACCCT
Downstream 100 bases:
>100_bases AAAAGCCCGTCATTTCCGGCTGGGTGCTTTCCTTCGGTTCGGAGAAGGCGCTCCTTCAGGCCGTCCGCGTGCTGGTGAAG GAGGAAAATCTGCGCTGGGA
Product: Polysulphide reductase NrfD
Products: NA
Alternate protein names: Molybdopterin Oxidoredutase Membrane Subunit; Molybdopterin Oxidoreductase; Molybdopterin Oxidoreductase Membrane Subunit; NrfD Family Oxidoreductase Membrane Subunit; Polysulphide Reductase; Polysulphide Reductase NrfD Superfamily; Polysulphide Reductase Nrfd; Oxidoredutase Membrane Subunit Nrfd Family; Anaerobic Dehydrogenase Membrane Anchor Subunit
Number of amino acids: Translated: 448; Mature: 448
Protein sequence:
>448_residues MQIMNRPAPSVPTADIPVEAMLAEVRKPLGPVWWSVFLASALLAAWGIGWSSWRIAAEGVGVLGVNNNVVWGLDIVHFVF WIGLGHAGTLISAVLLLTRQSWRSPIARGAEQMTLCAVICAAVFPVVHVGRVWMAWMASPLPEVSGIWPDMASPLMWDVM AVSTYFLLSLLYWYIGLVPDFALLRDCCKGRLRRRYGWLALGWQGTGRQWRAYEKASLLFAVILTPLVVSVHSVVSFDFS VTQVPGWHQSIFPPYFVGGAILSGMAMVQLILLGVRRLMAGSGVRRAVTPAILDLSSRFVLALSLVMGAMYLWEHLAAIL NGGSPEPFPGRNPVNAVFLIVMVAGNVALPQLFWFRSLRTNRWVIAAVALGVLAGMWMERFWIVVNSLKASLLAANIGEY FPSVTDLAMMAGSVGLFMALYMALVRVAPFFSLCDVREQQSLNKEGGA
Sequences:
>Translated_448_residues MQIMNRPAPSVPTADIPVEAMLAEVRKPLGPVWWSVFLASALLAAWGIGWSSWRIAAEGVGVLGVNNNVVWGLDIVHFVF WIGLGHAGTLISAVLLLTRQSWRSPIARGAEQMTLCAVICAAVFPVVHVGRVWMAWMASPLPEVSGIWPDMASPLMWDVM AVSTYFLLSLLYWYIGLVPDFALLRDCCKGRLRRRYGWLALGWQGTGRQWRAYEKASLLFAVILTPLVVSVHSVVSFDFS VTQVPGWHQSIFPPYFVGGAILSGMAMVQLILLGVRRLMAGSGVRRAVTPAILDLSSRFVLALSLVMGAMYLWEHLAAIL NGGSPEPFPGRNPVNAVFLIVMVAGNVALPQLFWFRSLRTNRWVIAAVALGVLAGMWMERFWIVVNSLKASLLAANIGEY FPSVTDLAMMAGSVGLFMALYMALVRVAPFFSLCDVREQQSLNKEGGA >Mature_448_residues MQIMNRPAPSVPTADIPVEAMLAEVRKPLGPVWWSVFLASALLAAWGIGWSSWRIAAEGVGVLGVNNNVVWGLDIVHFVF WIGLGHAGTLISAVLLLTRQSWRSPIARGAEQMTLCAVICAAVFPVVHVGRVWMAWMASPLPEVSGIWPDMASPLMWDVM AVSTYFLLSLLYWYIGLVPDFALLRDCCKGRLRRRYGWLALGWQGTGRQWRAYEKASLLFAVILTPLVVSVHSVVSFDFS VTQVPGWHQSIFPPYFVGGAILSGMAMVQLILLGVRRLMAGSGVRRAVTPAILDLSSRFVLALSLVMGAMYLWEHLAAIL NGGSPEPFPGRNPVNAVFLIVMVAGNVALPQLFWFRSLRTNRWVIAAVALGVLAGMWMERFWIVVNSLKASLLAANIGEY FPSVTDLAMMAGSVGLFMALYMALVRVAPFFSLCDVREQQSLNKEGGA
Specific function: Unknown
COG id: COG5557
COG function: function code C; Polysulphide reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49149; Mature: 49149
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIMNRPAPSVPTADIPVEAMLAEVRKPLGPVWWSVFLASALLAAWGIGWSSWRIAAEGV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEHCCCC GVLGVNNNVVWGLDIVHFVFWIGLGHAGTLISAVLLLTRQSWRSPIARGAEQMTLCAVIC EEEECCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHH AAVFPVVHVGRVWMAWMASPLPEVSGIWPDMASPLMWDVMAVSTYFLLSLLYWYIGLVPD HHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FALLRDCCKGRLRRRYGWLALGWQGTGRQWRAYEKASLLFAVILTPLVVSVHSVVSFDFS HHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE VTQVPGWHQSIFPPYFVGGAILSGMAMVQLILLGVRRLMAGSGVRRAVTPAILDLSSRFV ECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LALSLVMGAMYLWEHLAAILNGGSPEPFPGRNPVNAVFLIVMVAGNVALPQLFWFRSLRT HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC NRWVIAAVALGVLAGMWMERFWIVVNSLKASLLAANIGEYFPSVTDLAMMAGSVGLFMAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH YMALVRVAPFFSLCDVREQQSLNKEGGA HHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MQIMNRPAPSVPTADIPVEAMLAEVRKPLGPVWWSVFLASALLAAWGIGWSSWRIAAEGV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCEEHCCCC GVLGVNNNVVWGLDIVHFVFWIGLGHAGTLISAVLLLTRQSWRSPIARGAEQMTLCAVIC EEEECCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHH AAVFPVVHVGRVWMAWMASPLPEVSGIWPDMASPLMWDVMAVSTYFLLSLLYWYIGLVPD HHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FALLRDCCKGRLRRRYGWLALGWQGTGRQWRAYEKASLLFAVILTPLVVSVHSVVSFDFS HHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE VTQVPGWHQSIFPPYFVGGAILSGMAMVQLILLGVRRLMAGSGVRRAVTPAILDLSSRFV ECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LALSLVMGAMYLWEHLAAILNGGSPEPFPGRNPVNAVFLIVMVAGNVALPQLFWFRSLRT HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC NRWVIAAVALGVLAGMWMERFWIVVNSLKASLLAANIGEYFPSVTDLAMMAGSVGLFMAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH YMALVRVAPFFSLCDVREQQSLNKEGGA HHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA