Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736233
Identifier: 187736233
GI number: 187736233
Start: 2125808
End: 2126767
Strand: Direct
Name: 187736233
Synonym: Amuc_1746
Alternate gene names: NA
Gene position: 2125808-2126767 (Clockwise)
Preceding gene: 187736231
Following gene: 187736234
Centisome position: 79.79
GC content: 50.73
Gene sequence:
>960_bases ATGAGTAAAATAAGCCATATAAAATATATGGTGCTTTGCAATCTTCCCTACCGTTTGCGGGAAATCGCCGGACGGATTGC GAAGAAATGCAGGAGAAGGAAAGACCGGTCTCTTGAAGCGAAGCTGGAGGATATTCGCAATTTGCTTATTTATAACCACC CTATTTCCTCAGTTCCCCCGGCGACGGGGAAGTTGAGGCTCCTTCAGGACGGCAATACGGTTTTGCTGGCCCTTTTTGCG CGCAAATGCCGGGAAAACGGACTGCGGTACTGGCTGGATTACGGCACTTTGCTGGGGGCGGTAAGGCACAGGGGCTTTAT TCCGTGGGATGATGATCTGGATGTGAGCATGATGAGGCCGGAGTTCGACCGCCTGCTGGAACTGCTTCCCGTTCTTTTCC CCCGTGAGGAAGGATTTACCTGGAACAGGCACGCCTTTCTGCAAATAGGATATGAGGGCACCCCCCTCAACCTTGATGTG TATCCCTATCATTTTTATGCAGAGAGTCTTTCATCTCCGGAACAGCATGAAAAGCTGGACAGGCTTTTGAGCGGATTTAA GAAAGACGTGGTGCTGGTAGGTTCCAGGATGAACCTGACCGATGGGCAGGTTCAGGAGAAAATCCGCCAGGATATTCTGG AAGGAAGGGATGCTGCCGGGGAAGATGAAGCCCCCGGGATTTTTCTTTCTCCTGCCATTACGTTTACAAAAAACACGCAC CTTTCCTATGAAACGTTCTTTCCCCTTGGCTCCGCAGAATTTGAGGGGATAATATTTTCCGTGCCCAACCATGCCCGCCA GTACCTGCAATTTTTTTACGGCGACTATCTGTCTTATCCGGAACGCATCCAGTTCAAGCATCCTTCCGTGAAGGCCATGG TGGAGAAGGTTCCCTTTGAGGCGGCGGTCAACCGTTTCATTGACGTTTACGGAAAGCGGATTGATGCGCTCATGCCATGA
Upstream 100 bases:
>100_bases AGCATTGTATAGATCAATGTATGTGCTACGATTCTTCCGCATTTAATAATCATGCTTTGCCGTTTCCTTGGAACCGGATT AATTTTTCAACTAACAGGAT
Downstream 100 bases:
>100_bases AAACGGTTATTACTTACGGAACCTTTGATTTGCTGCACACGGGGCACGTGAATCTGCTGAAGAGAGCCCGGAAACTGGGG GACCGGCTCATCGTCGGCGT
Product: LicD family protein
Products: NA
Alternate protein names: Lipooligosaccharide Cholinephosphotransferase; LPS Biosynthesis Protein; LicD2 Protein; Lipopolysaccharide Cholinephosphotransferase; 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase; LPS Biosynthesis Protein-Like Protein; LicD-Family Phosphotransferase; LICD Protein Family; Oligosaccaride Glycerophosphotransferase; LicD Protein; Lipopolysaccharide Biosynthesis Protein; Lipopolysaccharide Biosynthesis Protein LicD; Polysaccharide Biosynthesis Protein; LicD3 Protein; LicD1 Protein
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSKISHIKYMVLCNLPYRLREIAGRIAKKCRRRKDRSLEAKLEDIRNLLIYNHPISSVPPATGKLRLLQDGNTVLLALFA RKCRENGLRYWLDYGTLLGAVRHRGFIPWDDDLDVSMMRPEFDRLLELLPVLFPREEGFTWNRHAFLQIGYEGTPLNLDV YPYHFYAESLSSPEQHEKLDRLLSGFKKDVVLVGSRMNLTDGQVQEKIRQDILEGRDAAGEDEAPGIFLSPAITFTKNTH LSYETFFPLGSAEFEGIIFSVPNHARQYLQFFYGDYLSYPERIQFKHPSVKAMVEKVPFEAAVNRFIDVYGKRIDALMP
Sequences:
>Translated_319_residues MSKISHIKYMVLCNLPYRLREIAGRIAKKCRRRKDRSLEAKLEDIRNLLIYNHPISSVPPATGKLRLLQDGNTVLLALFA RKCRENGLRYWLDYGTLLGAVRHRGFIPWDDDLDVSMMRPEFDRLLELLPVLFPREEGFTWNRHAFLQIGYEGTPLNLDV YPYHFYAESLSSPEQHEKLDRLLSGFKKDVVLVGSRMNLTDGQVQEKIRQDILEGRDAAGEDEAPGIFLSPAITFTKNTH LSYETFFPLGSAEFEGIIFSVPNHARQYLQFFYGDYLSYPERIQFKHPSVKAMVEKVPFEAAVNRFIDVYGKRIDALMP >Mature_318_residues SKISHIKYMVLCNLPYRLREIAGRIAKKCRRRKDRSLEAKLEDIRNLLIYNHPISSVPPATGKLRLLQDGNTVLLALFAR KCRENGLRYWLDYGTLLGAVRHRGFIPWDDDLDVSMMRPEFDRLLELLPVLFPREEGFTWNRHAFLQIGYEGTPLNLDVY PYHFYAESLSSPEQHEKLDRLLSGFKKDVVLVGSRMNLTDGQVQEKIRQDILEGRDAAGEDEAPGIFLSPAITFTKNTHL SYETFFPLGSAEFEGIIFSVPNHARQYLQFFYGDYLSYPERIQFKHPSVKAMVEKVPFEAAVNRFIDVYGKRIDALMP
Specific function: Unknown
COG id: COG3475
COG function: function code M; LPS biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36922; Mature: 36791
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKISHIKYMVLCNLPYRLREIAGRIAKKCRRRKDRSLEAKLEDIRNLLIYNHPISSVPP CCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC ATGKLRLLQDGNTVLLALFARKCRENGLRYWLDYGTLLGAVRHRGFIPWDDDLDVSMMRP CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCEECCH EFDRLLELLPVLFPREEGFTWNRHAFLQIGYEGTPLNLDVYPYHFYAESLSSPEQHEKLD HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEEEEHHHHHHHCCCCHHHHHHH RLLSGFKKDVVLVGSRMNLTDGQVQEKIRQDILEGRDAAGEDEAPGIFLSPAITFTKNTH HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEECCCC LSYETFFPLGSAEFEGIIFSVPNHARQYLQFFYGDYLSYPERIQFKHPSVKAMVEKVPFE CCEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHCCHH AAVNRFIDVYGKRIDALMP HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SKISHIKYMVLCNLPYRLREIAGRIAKKCRRRKDRSLEAKLEDIRNLLIYNHPISSVPP CCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC ATGKLRLLQDGNTVLLALFARKCRENGLRYWLDYGTLLGAVRHRGFIPWDDDLDVSMMRP CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCEECCH EFDRLLELLPVLFPREEGFTWNRHAFLQIGYEGTPLNLDVYPYHFYAESLSSPEQHEKLD HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEEEEHHHHHHHCCCCHHHHHHH RLLSGFKKDVVLVGSRMNLTDGQVQEKIRQDILEGRDAAGEDEAPGIFLSPAITFTKNTH HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEECCCC LSYETFFPLGSAEFEGIIFSVPNHARQYLQFFYGDYLSYPERIQFKHPSVKAMVEKVPFE CCEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHCCHH AAVNRFIDVYGKRIDALMP HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA