Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is tarD [H]

Identifier: 187736234

GI number: 187736234

Start: 2126764

End: 2128119

Strand: Direct

Name: tarD [H]

Synonym: Amuc_1747

Alternate gene names: 187736234

Gene position: 2126764-2128119 (Clockwise)

Preceding gene: 187736233

Following gene: 187736237

Centisome position: 79.83

GC content: 53.47

Gene sequence:

>1356_bases
ATGAAAACGGTTATTACTTACGGAACCTTTGATTTGCTGCACACGGGGCACGTGAATCTGCTGAAGAGAGCCCGGAAACT
GGGGGACCGGCTCATCGTCGGCGTGACTACGGACAGTTACGACCAGAGCCGCGGCAAGCTGAATGTCATGGAGAGCCTGG
AGGAACGCATGGAAAATGTGCGGAAAACCGGTCTGGCGGATCTCATTATTAAGGAAGAACTAGAAGGGCAGAAGATTCAT
GACATACGGAAGTACGGGGCGGATGTTTTTGTGATTGGCTCCGACTGGTCGGGGAAATTTGACTATCTTCGCGATTATTG
TGAGGTGGTTTACCTGGAACGCACCAAGGGCGTTTCTTCAACAGACCTCCGTTCCGCCCGGAATCCCATTGTATATATGG
GAATTGCAGGTCACGGGCGCATAGCGGGCCGTTTTCTCCGGGAGTCCAAATATGTCAGCAATATTGAAATAACAGCCGTT
TTCGGAAGGAATGAGGAGAAAGTCCGCCGTTTTGCAGAGTTCCACGCTCTGCTGGAATATTATACGGAATACGAACAGTT
TCTGGACCGGGTTCATGCCGTTTATATTGCCGTCCCCCATCATCTCCATTATGAAATGGCCAGGAGGGCCCTGTTGCGGG
GGAAGCATGTATTGTGCGAGAAGCCTCTTGCCCTTGCCCGGGAGGAGGCGGAAGAGCTGTTCCGGCTGGCCGAAGAGAAA
GGAGTCGTTTTGCTGGAAGCCCTTAAAACTGCGTTTTGTCCGGCTTTCCAGCAACTGACCAGTTTGGCGGGGAGCGGCAT
TATTGGTTCCATCAAGGCGGTGGACGCCACGTTTACCAAGCTGATAGAGGATGAGGCTGCCAGGGAGTATGACCCCATGC
AGGCCGGAGGCGCCTGGACGGAACTGGGTTCCTATCCCGCCTTTGTCATTGGGAAGCTTCTGGGAACCGAGCCCCGCAGG
ATTCGTTTTGTTACTTGCAGAAAGCCTCATACGGGCGTGGACGTGTTCACGCGCGCGGAATTTCTTTATTCCAATGCAGT
AGCCACCGCCACGGCAGCCATAGGAGCCAAGCAGGAAGGGGACTTGTGCATTACCGGAACGGAGGGGTATATTTATGTGC
CGGCGCCTTGGTGGAAGACGGAGATGTTTGAAGTGCGGTTTGAGGATGCCCGGCTCAACAGGAAATATTTTGCCAATTTT
GAAGGGGATGGGCTGCGTTATGAACTTGGCGCGTTTTTGCGCCTGATTCATGGCTGCCAGCACGGCAACCGTCTTTTGAC
CCGTGAGGATTCCGTGTTCATGGCTGATGTTGCCTCCCGTTTCAGGAGAGGGTATTGCGTGGAAGAGATCAGTTAG

Upstream 100 bases:

>100_bases
AGCATCCTTCCGTGAAGGCCATGGTGGAGAAGGTTCCCTTTGAGGCGGCGGTCAACCGTTTCATTGACGTTTACGGAAAG
CGGATTGATGCGCTCATGCC

Downstream 100 bases:

>100_bases
AAAGAAGAGGCCTTCTTACACCTGTGGAATTCTGGGGTAGTGCCGACGGAACTTTTTCTTGGAACCGTTTTGTTTCGCAT
GAATGGAAGCCATCCTATTA

Product: cytidyltransferase-related domain protein

Products: NA

Alternate protein names: GCT; Gro-PCT; CDP-glycerol pyrophosphorylase [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENVRKTGLADLIIKEELEGQKIH
DIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSSTDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAV
FGRNEEKVRRFAEFHALLEYYTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK
GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWTELGSYPAFVIGKLLGTEPRR
IRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEGDLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANF
EGDGLRYELGAFLRLIHGCQHGNRLLTREDSVFMADVASRFRRGYCVEEIS

Sequences:

>Translated_451_residues
MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENVRKTGLADLIIKEELEGQKIH
DIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSSTDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAV
FGRNEEKVRRFAEFHALLEYYTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK
GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWTELGSYPAFVIGKLLGTEPRR
IRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEGDLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANF
EGDGLRYELGAFLRLIHGCQHGNRLLTREDSVFMADVASRFRRGYCVEEIS
>Mature_451_residues
MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENVRKTGLADLIIKEELEGQKIH
DIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSSTDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAV
FGRNEEKVRRFAEFHALLEYYTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK
GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWTELGSYPAFVIGKLLGTEPRR
IRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEGDLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANF
EGDGLRYELGAFLRLIHGCQHGNRLLTREDSVFMADVASRFRRGYCVEEIS

Specific function: Provides activated glycerol phosphate for teichoic acid synthesis, via incorporation into the linkage unit by TarB and TarF (Probable) [H]

COG id: COG0615

COG function: function code MI; Cytidylyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidylyltransferase family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=328, Percent_Identity=27.4390243902439, Blast_Score=100, Evalue=5e-21,
Organism=Escherichia coli, GI145693182, Length=214, Percent_Identity=27.1028037383178, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24581117, Length=327, Percent_Identity=26.2996941896024, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24581115, Length=321, Percent_Identity=28.9719626168224, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24584727, Length=223, Percent_Identity=27.3542600896861, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004821
- InterPro:   IPR004820
- InterPro:   IPR006409
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01467 CTP_transf_2 [H]

EC number: =2.7.7.39 [H]

Molecular weight: Translated: 51234; Mature: 51234

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENV
CCEEEEECCHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
RKTGLADLIIKEELEGQKIHDIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSS
HHCCHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHEEEEECCCCCCC
TDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAVFGRNEEKVRRFAEFHALLEY
HHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
YTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK
HHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHC
GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWT
CEEHHHHHHHHHCHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ELGSYPAFVIGKLLGTEPRRIRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEG
HHCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
DLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANFEGDGLRYELGAFLRLIHGCQ
CEEEECCCCEEEECCCCCCCCEEEEEEHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHC
HGNRLLTREDSVFMADVASRFRRGYCVEEIS
CCCEEEECCCCCHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MKTVITYGTFDLLHTGHVNLLKRARKLGDRLIVGVTTDSYDQSRGKLNVMESLEERMENV
CCEEEEECCHHHHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
RKTGLADLIIKEELEGQKIHDIRKYGADVFVIGSDWSGKFDYLRDYCEVVYLERTKGVSS
HHCCHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHEEEEECCCCCCC
TDLRSARNPIVYMGIAGHGRIAGRFLRESKYVSNIEITAVFGRNEEKVRRFAEFHALLEY
HHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
YTEYEQFLDRVHAVYIAVPHHLHYEMARRALLRGKHVLCEKPLALAREEAEELFRLAEEK
HHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHC
GVVLLEALKTAFCPAFQQLTSLAGSGIIGSIKAVDATFTKLIEDEAAREYDPMQAGGAWT
CEEHHHHHHHHHCHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ELGSYPAFVIGKLLGTEPRRIRFVTCRKPHTGVDVFTRAEFLYSNAVATATAAIGAKQEG
HHCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
DLCITGTEGYIYVPAPWWKTEMFEVRFEDARLNRKYFANFEGDGLRYELGAFLRLIHGCQ
CEEEECCCCEEEECCCCCCCCEEEEEEHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHC
HGNRLLTREDSVFMADVASRFRRGYCVEEIS
CCCEEEECCCCCHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11882717 [H]