Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is lpd [H]
Identifier: 187736176
GI number: 187736176
Start: 2053033
End: 2054421
Strand: Direct
Name: lpd [H]
Synonym: Amuc_1689
Alternate gene names: 187736176
Gene position: 2053033-2054421 (Clockwise)
Preceding gene: 187736175
Following gene: 187736177
Centisome position: 77.06
GC content: 59.25
Gene sequence:
>1389_bases ATGCAATATGATCTTATCGTCATTGGTGGAGGCCCTGCCGGCTATGTGGGCGCCATCCGCGCCGCCCAGCTGGGGAAATC CGTGGTGTGCGTGGAACGCGACCGGGTGGGGGGCACCTGTCTGAACTGGGGATGCATCCCCACCAAGGCGCTTCTGAAAA ATGCGGAGGCCTACCGGATCGTGACGGACCGCGCCAGGGAATTCGGCATGATGGTGGAGGGCGTCAGCGTGGATTGGAGT GAAGTGATCGGCCGTTCCCGCAAGGTCAGCGACCGCCTGGCAGGCGGCGTGGGGTTCCTCTTCAAGAAAAACAAGGTGGA TTCCGTTACGGGGGAAGCCTCCATCATTTCCCCCGGCAGGGTGGAAGTAAAGGCCGCCGACGGAACGGTGAATGTTCTGG AGGGAAAGAATATCCTGATCTGTACCGGCTGCGTCACCCGCACGGTGCCCAGCCTTCCCCTGAACGGCACTACTGTCATC GGCTCCAGGGAAGCCATGGTGCTGGAAAAGCGGCCTGAAAGCATGATCATCATCGGTTCCGGAGCTATCGGCACGGAATT TGCCTACATTTACAATTCATTCGGCACCAGGGTGACGCTTATTGAAGCGCTTCCCCGGATGCTTCCCAATGAAGACGACG ACTCCTGCATGACGCTGGAACGGGCATTCAAGAAGCAGGGCATCAAGGTGATGACGGGAGCTTCCGTGGAATCCGTCACG GAAACCTGTGACGGACAGGTCAGGGCCAACGTGAAAAACAGCAGGGGACAGGAAGAGGAAATCACGGCGGACGTCTGCCT GGTGGCCATCGGCGTGAAGCCGGTCGTTCCCGCCGCTCCCGGCCTGGAATTGACGGAAAAGGGATTCATCAAGGTGAATG ACCGCTATGCGACTTCCATTCCCGGCGTTTATGCGGCAGGCGACGTGATCGGCGGCGTGCTGCTGGCGCATACGGCTTCT TTTGAAGCTGTCCAGGCTGTGGAGGGCATGTTTAATCCGGACTACCAGCCCCGGCAGGTCGGCTTCTTCCCGAGCTGCAC GTACTGCTACCCTCAGGTGGCTTCCGTAGGTAAAACGGAACGCGCCCTCAAGGAAGCGGGCGTGGAATACAAGGTGGGGA AATTCCCCTTCCAGGCCATTGGCAAGGCTGTAGCCGCCGGAGAGCCGGACGGCTTCGTGAAAACCCTGTACGGCGCCAAA AACGGAGAATTGCTGGGTGCCCATATCGTGGGGCCGGAAGCCACGGAACTGATTGCCGCGCTGGGCATCGGCATTCAGGC GGAACTGACGGATGAAGATATCCACGCCACCATTTTCGCCCATCCCACGCTGTCTGAGGCCATTCATGAATCCATGCTGG CTTCCGAGGGGATTGCCATTCACATGTAA
Upstream 100 bases:
>100_bases ATCTCTGGGTCCTTACCTCTGCTATCTGTCGGCCTCCCGAACCGGCGCATGCTCATATTCCTTCTTTACCCGCAAGGGGG GATGCCTTTATAGTAATTTC
Downstream 100 bases:
>100_bases CGGTTTTCACGGGAAGAGCCCCGCAACGGGGCTCTTTTTCTCCATTAAAAAAGATGAACGATAACCTGCGCTGGAAACAA AGGCTTCAAAACCTGAATAA
Product: dihydrolipoamide dehydrogenase
Products: NA
Alternate protein names: Dihydrolipoamide dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes [H]
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MQYDLIVIGGGPAGYVGAIRAAQLGKSVVCVERDRVGGTCLNWGCIPTKALLKNAEAYRIVTDRAREFGMMVEGVSVDWS EVIGRSRKVSDRLAGGVGFLFKKNKVDSVTGEASIISPGRVEVKAADGTVNVLEGKNILICTGCVTRTVPSLPLNGTTVI GSREAMVLEKRPESMIIIGSGAIGTEFAYIYNSFGTRVTLIEALPRMLPNEDDDSCMTLERAFKKQGIKVMTGASVESVT ETCDGQVRANVKNSRGQEEEITADVCLVAIGVKPVVPAAPGLELTEKGFIKVNDRYATSIPGVYAAGDVIGGVLLAHTAS FEAVQAVEGMFNPDYQPRQVGFFPSCTYCYPQVASVGKTERALKEAGVEYKVGKFPFQAIGKAVAAGEPDGFVKTLYGAK NGELLGAHIVGPEATELIAALGIGIQAELTDEDIHATIFAHPTLSEAIHESMLASEGIAIHM
Sequences:
>Translated_462_residues MQYDLIVIGGGPAGYVGAIRAAQLGKSVVCVERDRVGGTCLNWGCIPTKALLKNAEAYRIVTDRAREFGMMVEGVSVDWS EVIGRSRKVSDRLAGGVGFLFKKNKVDSVTGEASIISPGRVEVKAADGTVNVLEGKNILICTGCVTRTVPSLPLNGTTVI GSREAMVLEKRPESMIIIGSGAIGTEFAYIYNSFGTRVTLIEALPRMLPNEDDDSCMTLERAFKKQGIKVMTGASVESVT ETCDGQVRANVKNSRGQEEEITADVCLVAIGVKPVVPAAPGLELTEKGFIKVNDRYATSIPGVYAAGDVIGGVLLAHTAS FEAVQAVEGMFNPDYQPRQVGFFPSCTYCYPQVASVGKTERALKEAGVEYKVGKFPFQAIGKAVAAGEPDGFVKTLYGAK NGELLGAHIVGPEATELIAALGIGIQAELTDEDIHATIFAHPTLSEAIHESMLASEGIAIHM >Mature_462_residues MQYDLIVIGGGPAGYVGAIRAAQLGKSVVCVERDRVGGTCLNWGCIPTKALLKNAEAYRIVTDRAREFGMMVEGVSVDWS EVIGRSRKVSDRLAGGVGFLFKKNKVDSVTGEASIISPGRVEVKAADGTVNVLEGKNILICTGCVTRTVPSLPLNGTTVI GSREAMVLEKRPESMIIIGSGAIGTEFAYIYNSFGTRVTLIEALPRMLPNEDDDSCMTLERAFKKQGIKVMTGASVESVT ETCDGQVRANVKNSRGQEEEITADVCLVAIGVKPVVPAAPGLELTEKGFIKVNDRYATSIPGVYAAGDVIGGVLLAHTAS FEAVQAVEGMFNPDYQPRQVGFFPSCTYCYPQVASVGKTERALKEAGVEYKVGKFPFQAIGKAVAAGEPDGFVKTLYGAK NGELLGAHIVGPEATELIAALGIGIQAELTDEDIHATIFAHPTLSEAIHESMLASEGIAIHM
Specific function: Lipoamide dehydrogenase is a component of the alpha- ketoacid dehydrogenase complexes [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI91199540, Length=466, Percent_Identity=39.6995708154506, Blast_Score=309, Evalue=3e-84, Organism=Homo sapiens, GI50301238, Length=460, Percent_Identity=26.304347826087, Blast_Score=127, Evalue=2e-29, Organism=Homo sapiens, GI22035672, Length=458, Percent_Identity=26.6375545851528, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI33519430, Length=462, Percent_Identity=23.3766233766234, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI33519428, Length=462, Percent_Identity=23.3766233766234, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI33519426, Length=462, Percent_Identity=23.3766233766234, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI148277065, Length=462, Percent_Identity=23.3766233766234, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI148277071, Length=462, Percent_Identity=23.3766233766234, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI291045266, Length=486, Percent_Identity=23.2510288065844, Blast_Score=70, Evalue=4e-12, Organism=Escherichia coli, GI1786307, Length=458, Percent_Identity=31.6593886462882, Blast_Score=226, Evalue=2e-60, Organism=Escherichia coli, GI87082354, Length=454, Percent_Identity=27.9735682819383, Blast_Score=172, Evalue=5e-44, Organism=Escherichia coli, GI87081717, Length=471, Percent_Identity=28.2377919320594, Blast_Score=165, Evalue=7e-42, Organism=Escherichia coli, GI1789915, Length=436, Percent_Identity=26.3761467889908, Blast_Score=135, Evalue=7e-33, Organism=Caenorhabditis elegans, GI32565766, Length=463, Percent_Identity=36.0691144708423, Blast_Score=286, Evalue=2e-77, Organism=Caenorhabditis elegans, GI17557007, Length=480, Percent_Identity=25.8333333333333, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71983429, Length=462, Percent_Identity=26.1904761904762, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI71983419, Length=462, Percent_Identity=26.1904761904762, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI71982272, Length=480, Percent_Identity=23.75, Blast_Score=78, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6321091, Length=476, Percent_Identity=37.6050420168067, Blast_Score=291, Evalue=1e-79, Organism=Saccharomyces cerevisiae, GI6325240, Length=467, Percent_Identity=27.4089935760171, Blast_Score=182, Evalue=9e-47, Organism=Saccharomyces cerevisiae, GI6325166, Length=466, Percent_Identity=27.2532188841202, Blast_Score=149, Evalue=1e-36, Organism=Drosophila melanogaster, GI21358499, Length=462, Percent_Identity=38.3116883116883, Blast_Score=308, Evalue=6e-84, Organism=Drosophila melanogaster, GI24640553, Length=480, Percent_Identity=26.6666666666667, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI24640549, Length=480, Percent_Identity=26.6666666666667, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI24640551, Length=479, Percent_Identity=26.7223382045929, Blast_Score=102, Evalue=4e-22, Organism=Drosophila melanogaster, GI17737741, Length=475, Percent_Identity=24.6315789473684, Blast_Score=92, Evalue=8e-19,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1880 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR006258 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.4 [H]
Molecular weight: Translated: 48952; Mature: 48952
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS00076 PYRIDINE_REDOX_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQYDLIVIGGGPAGYVGAIRAAQLGKSVVCVERDRVGGTCLNWGCIPTKALLKNAEAYRI CCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCHHHHHCCCCEEEE VTDRAREFGMMVEGVSVDWSEVIGRSRKVSDRLAGGVGFLFKKNKVDSVTGEASIISPGR HHHHHHHCCEEEECCCCCHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCE VEVKAADGTVNVLEGKNILICTGCVTRTVPSLPLNGTTVIGSREAMVLEKRPESMIIIGS EEEEECCCEEEEECCCCEEEECCHHHHCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEC GAIGTEFAYIYNSFGTRVTLIEALPRMLPNEDDDSCMTLERAFKKQGIKVMTGASVESVT CCCCHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHH ETCDGQVRANVKNSRGQEEEITADVCLVAIGVKPVVPAAPGLELTEKGFIKVNDRYATSI HHCCCEEEECCCCCCCCHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCEECCC PGVYAAGDVIGGVLLAHTASFEAVQAVEGMFNPDYQPRQVGFFPSCTYCYPQVASVGKTE CCCEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEECCCCCCHHHCHHHHHCCHHH RALKEAGVEYKVGKFPFQAIGKAVAAGEPDGFVKTLYGAKNGELLGAHIVGPEATELIAA HHHHHCCCEEEECCCCHHHHHHHHHCCCCCCHHHHECCCCCCCEEEEEECCCCHHHHHHH LGIGIQAELTDEDIHATIFAHPTLSEAIHESMLASEGIAIHM HCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEC >Mature Secondary Structure MQYDLIVIGGGPAGYVGAIRAAQLGKSVVCVERDRVGGTCLNWGCIPTKALLKNAEAYRI CCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCHHHHHCCCCEEEE VTDRAREFGMMVEGVSVDWSEVIGRSRKVSDRLAGGVGFLFKKNKVDSVTGEASIISPGR HHHHHHHCCEEEECCCCCHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCE VEVKAADGTVNVLEGKNILICTGCVTRTVPSLPLNGTTVIGSREAMVLEKRPESMIIIGS EEEEECCCEEEEECCCCEEEECCHHHHCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEC GAIGTEFAYIYNSFGTRVTLIEALPRMLPNEDDDSCMTLERAFKKQGIKVMTGASVESVT CCCCHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHH ETCDGQVRANVKNSRGQEEEITADVCLVAIGVKPVVPAAPGLELTEKGFIKVNDRYATSI HHCCCEEEECCCCCCCCHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCEECCC PGVYAAGDVIGGVLLAHTASFEAVQAVEGMFNPDYQPRQVGFFPSCTYCYPQVASVGKTE CCCEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEECCCCCCHHHCHHHHHCCHHH RALKEAGVEYKVGKFPFQAIGKAVAAGEPDGFVKTLYGAKNGELLGAHIVGPEATELIAA HHHHHCCCEEEECCCCHHHHHHHHHCCCCCCHHHHECCCCCCCEEEEEECCCCHHHHHHH LGIGIQAELTDEDIHATIFAHPTLSEAIHESMLASEGIAIHM HCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9515924 [H]