Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is cobD [H]
Identifier: 187736169
GI number: 187736169
Start: 2039754
End: 2040746
Strand: Reverse
Name: cobD [H]
Synonym: Amuc_1682
Alternate gene names: 187736169
Gene position: 2040746-2039754 (Counterclockwise)
Preceding gene: 187736170
Following gene: 187736168
Centisome position: 76.6
GC content: 62.64
Gene sequence:
>993_bases ATGTTCCCGTGCCCGTTCATCCTGCCTGCGGCCTTCCTGCTGGATATTCTGGCGGGAGAACCGCCCAACAGGTTTCATCC CGTCTGTCTGATCGGCCGGTGCGCGCTCCGCATGGAAACACTGGCGAGGCAAAGGTGGGGAGGAACTTTTCATGCGGGAA TGGCGGCCGCGCTGGCAACCTGCATTGCCGCATGGTTCGGCTGCGCGGCGCTCTTCCTTCCCTTTTCCCTGTTACCCTCC CCCTGGGCACCCTGGATTCCGTCCGTTCTGGTCATTTACATCTGCATGGCCCCGCGCAGCCTGGCCGAGCATGCCCGGAA GGTGGAAAACGCCCTGCGCAGCGGGAACGCCGGAGAGGCCCGGCACTCCGTCTCCATGATCGTGGGACGGGATACGGAAC GGATGGACGTCTACGGCATCGCCAGAGCGGCCATTGAAAGCGTGGCGGAGAACTTGACGGATGGCGTTTTTTCCACCCTG TTCTGGGCCTCAGCAGGCTGCCTGGCAGGAGGTGCCTCCGGGGCGGCTTCCGCCGCGCTGGCGCATCGTGTTTTCAACAT CCTGGATGCCATGTGGGGGAAAAAAAATGACCGGTACAGACACTTCGGCACCTTTGCCGCACGCACGGATGACGCGCTCA ACTTCATCCCCGCACGCCTTATTTTACCGTGTATTTCCTTTTCCGCCCTGATGGTGGAAGGAACCTCCGCCCGGAGGGCG CTCACCATGGGATGGGCCTTCCGGAACGCCCACGCCAGCCCCAATTCCGCATGGAGCGAAGCGGCCTTCGCTGGAGCGCT GGGCCTCCGTCTCGGGGGCCCGGTCTCTTACAAGGGAATTCCTGCAAACTACCCCTGGATAGGAACAGGGCGAACCAAAG CCTCCGCCAGCGACCTGGCCCTGGCCATTCGGCTCATGTGGACGACTGCCGCCACGGGTACGCTGGCGTTCACTCTCCTT CTTCTCTTCACCCCCCACTTCTGGACATCATGA
Upstream 100 bases:
>100_bases CTATGACCTGGACGGAGCGCTGGACCGCCTGGCGGACGTGGTCCGGAAACATCTGGACCTGAAAACCATTTACCGAGCTC TCCAACTAAAACGCTGACCC
Downstream 100 bases:
>100_bases ACAAACTGCATATCCCCCCGTTGGACGAACAGGCCGCAAAAGCGGCCCTGGAACATCAGAAAATTCTGGCCAAGCCTCCC CTTGCCCTGGGAAAACTGGA
Product: cobalamin biosynthesis protein CobD
Products: ADP; phosphate; Adenosyl cobinamide phosphate; Adenosyl cobinamide
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MFPCPFILPAAFLLDILAGEPPNRFHPVCLIGRCALRMETLARQRWGGTFHAGMAAALATCIAAWFGCAALFLPFSLLPS PWAPWIPSVLVIYICMAPRSLAEHARKVENALRSGNAGEARHSVSMIVGRDTERMDVYGIARAAIESVAENLTDGVFSTL FWASAGCLAGGASGAASAALAHRVFNILDAMWGKKNDRYRHFGTFAARTDDALNFIPARLILPCISFSALMVEGTSARRA LTMGWAFRNAHASPNSAWSEAAFAGALGLRLGGPVSYKGIPANYPWIGTGRTKASASDLALAIRLMWTTAATGTLAFTLL LLFTPHFWTS
Sequences:
>Translated_330_residues MFPCPFILPAAFLLDILAGEPPNRFHPVCLIGRCALRMETLARQRWGGTFHAGMAAALATCIAAWFGCAALFLPFSLLPS PWAPWIPSVLVIYICMAPRSLAEHARKVENALRSGNAGEARHSVSMIVGRDTERMDVYGIARAAIESVAENLTDGVFSTL FWASAGCLAGGASGAASAALAHRVFNILDAMWGKKNDRYRHFGTFAARTDDALNFIPARLILPCISFSALMVEGTSARRA LTMGWAFRNAHASPNSAWSEAAFAGALGLRLGGPVSYKGIPANYPWIGTGRTKASASDLALAIRLMWTTAATGTLAFTLL LLFTPHFWTS >Mature_330_residues MFPCPFILPAAFLLDILAGEPPNRFHPVCLIGRCALRMETLARQRWGGTFHAGMAAALATCIAAWFGCAALFLPFSLLPS PWAPWIPSVLVIYICMAPRSLAEHARKVENALRSGNAGEARHSVSMIVGRDTERMDVYGIARAAIESVAENLTDGVFSTL FWASAGCLAGGASGAASAALAHRVFNILDAMWGKKNDRYRHFGTFAARTDDALNFIPARLILPCISFSALMVEGTSARRA LTMGWAFRNAHASPNSAWSEAAFAGALGLRLGGPVSYKGIPANYPWIGTGRTKASASDLALAIRLMWTTAATGTLAFTLL LLFTPHFWTS
Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]
COG id: COG1270
COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CobD/CbiB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004485 [H]
Pfam domain/function: PF03186 CobD_Cbib [H]
EC number: 6.3.1.10
Molecular weight: Translated: 35421; Mature: 35421
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPCPFILPAAFLLDILAGEPPNRFHPVCLIGRCALRMETLARQRWGGTFHAGMAAALAT CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH CIAAWFGCAALFLPFSLLPSPWAPWIPSVLVIYICMAPRSLAEHARKVENALRSGNAGEA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCH RHSVSMIVGRDTERMDVYGIARAAIESVAENLTDGVFSTLFWASAGCLAGGASGAASAAL HHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHH AHRVFNILDAMWGKKNDRYRHFGTFAARTDDALNFIPARLILPCISFSALMVEGTSARRA HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCHHHH LTMGWAFRNAHASPNSAWSEAAFAGALGLRLGGPVSYKGIPANYPWIGTGRTKASASDLA HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH LAIRLMWTTAATGTLAFTLLLLFTPHFWTS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MFPCPFILPAAFLLDILAGEPPNRFHPVCLIGRCALRMETLARQRWGGTFHAGMAAALAT CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH CIAAWFGCAALFLPFSLLPSPWAPWIPSVLVIYICMAPRSLAEHARKVENALRSGNAGEA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCH RHSVSMIVGRDTERMDVYGIARAAIESVAENLTDGVFSTLFWASAGCLAGGASGAASAAL HHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHH AHRVFNILDAMWGKKNDRYRHFGTFAARTDDALNFIPARLILPCISFSALMVEGTSARRA HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCHHHH LTMGWAFRNAHASPNSAWSEAAFAGALGLRLGGPVSYKGIPANYPWIGTGRTKASASDLA HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH LAIRLMWTTAATGTLAFTLLLLFTPHFWTS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; adenosylcobyric acid; (R)-1-aminopropan-2-yl phosphate; (R)-1-aminopropan-2-ol
Specific reaction: (1) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate; (2) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA