Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is xerC [C]
Identifier: 187736162
GI number: 187736162
Start: 2029859
End: 2030950
Strand: Reverse
Name: xerC [C]
Synonym: Amuc_1675
Alternate gene names: 187736162
Gene position: 2030950-2029859 (Counterclockwise)
Preceding gene: 187736165
Following gene: 187736160
Centisome position: 76.23
GC content: 61.17
Gene sequence:
>1092_bases ATGTTTTTGACAAGTTTCGTTATTTTGGGCTTGATGAAGAGTATTATTTATCCTGTTGCCATGAACACCGACGCTAGCAC CGCCCTTGCCCTCCTCGCCTCTCTCCCCTTCTCCCTCACCGATGTTGCTCGTCTCATGCTGGAGCTGGTCGAAGGAAGCG GAGGCTCTTCCGTAAGAAAGAAAGAAGCTCTGCTCCTTCACTGCCGCCGCGTCATCGCCTTGGGGTGCGAAGCCGAGCAT CTCGCCACGCAAACGGTCTCCTTCTCCAAAGCCGTGGCAGAAACCCTGCGCGTCAAGGCCGACCGTTCGGCGCTCACCCT GCGCGATATCCGCTCCTTCACGCAGAGGATGATGCGAGATGTGCCCGATCTGGCGGCGCGTCCCATGCGCTCGATGACGA CGGCGGACTGTGCGGCTGTGTTGGAGAAAGTCTTTCTTTCACCCTCGCAACGTCGTCATGCGCGGGCGATTCTCTCGGGA GTGTTCACGGTGGCGTGGAAGAAAGGCTGGTGTGCGCATAATCCCGTGCGGCTGGTGGATGTGCCGCGCGTGACGGAGCG GGAGATCGTCCCCCTCCGTATCGAGGAAGTGCGCCGCCTGCTGCGGACGGCAGAGAGGGAGGAGTTTTCCCCCTGTGCGG CGGGCGTGGTGATGATGCTCTACGGCGGGATTCGTCCGTATGAGGTGCGGCGTTTGACCTGGGGCGATGTGGATTGGGAG GAGGGGGAGGTGCGGATTCGCCCGAGGCAGAGCAAGACGGGCGGCGGTCGGCAGGTGCCGCTGTCTCGCTCCGTGTTGGC ATGGTTGAGGAGTTATTATCCGCAGGGGGCAGAGAGGGAGTCGGTTTTCATCTGTCCGCCAGATTGGAACAGGCGGTGGC GCGCTTTGCGCTCGGCAGCGGGTTTTCAGACATGGCGTCAGGACGTCCTGCGGCATACCTTTGCGTCGTATCATGCGAAG ATGTTTCACGATTGGGGGCGTTTGCAGGCGGCGATGGGGCATCGGGACGGGACGCTGTTGCAGACGCGCTATGTGCATAC GCAGGGGATTCGAGGATGCGAGGTGCGAGCATTTTGGGAGTTGGCGGCGTGA
Upstream 100 bases:
>100_bases AATATATTATATTATTGAGCCAGACAAAGAAACAAGAAAAAAGGAAGAAAATTCTTCTCATTTTTTTCTTGTCATACAGG CATAACTACCGTTCCATTCC
Downstream 100 bases:
>100_bases GAAGAGACGCAAAAAAGCGTTAACGCGGCCGTGCACTGCTCATTCCAAACACTTATTTCCATCCGGAAACATGACGGAGG GAATCCGCAGGAAAATCCCT
Product: integrase family protein
Products: NA
Alternate protein names: Phage Integrase Family Site Specific Recombinase
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MFLTSFVILGLMKSIIYPVAMNTDASTALALLASLPFSLTDVARLMLELVEGSGGSSVRKKEALLLHCRRVIALGCEAEH LATQTVSFSKAVAETLRVKADRSALTLRDIRSFTQRMMRDVPDLAARPMRSMTTADCAAVLEKVFLSPSQRRHARAILSG VFTVAWKKGWCAHNPVRLVDVPRVTEREIVPLRIEEVRRLLRTAEREEFSPCAAGVVMMLYGGIRPYEVRRLTWGDVDWE EGEVRIRPRQSKTGGGRQVPLSRSVLAWLRSYYPQGAERESVFICPPDWNRRWRALRSAAGFQTWRQDVLRHTFASYHAK MFHDWGRLQAAMGHRDGTLLQTRYVHTQGIRGCEVRAFWELAA
Sequences:
>Translated_363_residues MFLTSFVILGLMKSIIYPVAMNTDASTALALLASLPFSLTDVARLMLELVEGSGGSSVRKKEALLLHCRRVIALGCEAEH LATQTVSFSKAVAETLRVKADRSALTLRDIRSFTQRMMRDVPDLAARPMRSMTTADCAAVLEKVFLSPSQRRHARAILSG VFTVAWKKGWCAHNPVRLVDVPRVTEREIVPLRIEEVRRLLRTAEREEFSPCAAGVVMMLYGGIRPYEVRRLTWGDVDWE EGEVRIRPRQSKTGGGRQVPLSRSVLAWLRSYYPQGAERESVFICPPDWNRRWRALRSAAGFQTWRQDVLRHTFASYHAK MFHDWGRLQAAMGHRDGTLLQTRYVHTQGIRGCEVRAFWELAA >Mature_363_residues MFLTSFVILGLMKSIIYPVAMNTDASTALALLASLPFSLTDVARLMLELVEGSGGSSVRKKEALLLHCRRVIALGCEAEH LATQTVSFSKAVAETLRVKADRSALTLRDIRSFTQRMMRDVPDLAARPMRSMTTADCAAVLEKVFLSPSQRRHARAILSG VFTVAWKKGWCAHNPVRLVDVPRVTEREIVPLRIEEVRRLLRTAEREEFSPCAAGVVMMLYGGIRPYEVRRLTWGDVDWE EGEVRIRPRQSKTGGGRQVPLSRSVLAWLRSYYPQGAERESVFICPPDWNRRWRALRSAAGFQTWRQDVLRHTFASYHAK MFHDWGRLQAAMGHRDGTLLQTRYVHTQGIRGCEVRAFWELAA
Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41181; Mature: 41181
Theoretical pI: Translated: 10.63; Mature: 10.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLTSFVILGLMKSIIYPVAMNTDASTALALLASLPFSLTDVARLMLELVEGSGGSSVRK CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH KEALLLHCRRVIALGCEAEHLATQTVSFSKAVAETLRVKADRSALTLRDIRSFTQRMMRD HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH VPDLAARPMRSMTTADCAAVLEKVFLSPSQRRHARAILSGVFTVAWKKGWCAHNPVRLVD CHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE VPRVTEREIVPLRIEEVRRLLRTAEREEFSPCAAGVVMMLYGGIRPYEVRRLTWGDVDWE CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCC EGEVRIRPRQSKTGGGRQVPLSRSVLAWLRSYYPQGAERESVFICPPDWNRRWRALRSAA CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH GFQTWRQDVLRHTFASYHAKMFHDWGRLQAAMGHRDGTLLQTRYVHTQGIRGCEVRAFWE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCHHHHHH LAA HCC >Mature Secondary Structure MFLTSFVILGLMKSIIYPVAMNTDASTALALLASLPFSLTDVARLMLELVEGSGGSSVRK CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH KEALLLHCRRVIALGCEAEHLATQTVSFSKAVAETLRVKADRSALTLRDIRSFTQRMMRD HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH VPDLAARPMRSMTTADCAAVLEKVFLSPSQRRHARAILSGVFTVAWKKGWCAHNPVRLVD CHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE VPRVTEREIVPLRIEEVRRLLRTAEREEFSPCAAGVVMMLYGGIRPYEVRRLTWGDVDWE CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCC EGEVRIRPRQSKTGGGRQVPLSRSVLAWLRSYYPQGAERESVFICPPDWNRRWRALRSAA CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH GFQTWRQDVLRHTFASYHAKMFHDWGRLQAAMGHRDGTLLQTRYVHTQGIRGCEVRAFWE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCHHHHHH LAA HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA