Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736160
Identifier: 187736160
GI number: 187736160
Start: 2027551
End: 2028651
Strand: Reverse
Name: 187736160
Synonym: Amuc_1673
Alternate gene names: NA
Gene position: 2028651-2027551 (Counterclockwise)
Preceding gene: 187736162
Following gene: 187736159
Centisome position: 76.15
GC content: 52.95
Gene sequence:
>1101_bases ATGACTTCGTTGCCAGCTTCTTCATTGGTTGAAACAGTAGCCAATAAAATCAAACAGATGATTCTCAGCGGTAGCCTGGT CAATATCCTGCCCGGAGAAAGAGAACTCGGGCACAGGTTATCCGTAGGCAGGGAAACCATCAGAAAGGCCCTGACCCTTC TGGAAAGGGATGCATGGATTGCCCCCCCACGCATCAAGGTTCCGAGGCGCATCCTGAAAACTACGGAAGAAGAAACGGTT AAAAATATCTTCTGCCATCCGGTTCAGGAAAAAAAAGAAATTCTCGGATTTCTGACGCCCCAGCCCCTCAAAAGGCTGGC TCAAAGCGTATTGGCGGAGATATATACCATCTCCAAAATTCTGGAGGAAGACGGCATCAGCGTCCGTATCTTTGAAGCTC CCTGGATCTTAGGCAATAACCCGGACAAGAGGCTTGCCAAGCTTGTTACCAAATCCGAATGCGTCTGCTGGATACTTCAC CGTTCCTCGGAGCAAACCCAGCTCTGGTTCAAGACGCACCGCATCCCCTGCATTGTGCGCGGCACCTCCTACCAGAGCAG CAACCTTCCCTATCTGGACCGCCACTGGGCGGCCACCACGCATCATGCGGCGCAGCACCTTTGGAACAAGGGGCACCGAA CGGTAGGCCTGTGCCTGCCTCCTGATCCGTTGAAGGGCCACCAGCTCATGCAAAAAGGTTTTTTCAGCTTTGCGGAACAG GGATGGAATCCCATCCTGGTTCCCACCCCGTTTGAAACGCCTCTCTTCTTTGAATACCTGGCCAAAGCGTTTAAAGAACA TCCGGATATGTCCGCCCTGGTAGCCACACGGGGCAACCAGATCGTTCCCATCCTTTCCTGGGTGGAAGCCCGTTCGCTGA GCATTCCGGATCAGCTCAGCCTGGTCAGCCTGACGTATGAACCCTTCATGGAACGCCTGCTGCCCACGATCACCTATTAT GAAGAGAACCAGACAAAAACGGTTCACAAGCTCATACGGATGCTCCGCTCCCTGACAGCCGGAAAAAATATCAAGAGCAT TTCCGTCATTCCGGAAATATACCCCGGCCAATCCGTTTCCCTGCACGCACCTTCCGCATAA
Upstream 100 bases:
>100_bases ACAACTTGCAACAACACCAGCTCTCCTTTTGGATTCTGCGGGGCAGGCAATCCCTACAATTGGCTCGAATTCACGCAATG CGATACGTATATACAAGAGT
Downstream 100 bases:
>100_bases TGCCTTTTTCCGGAAAGGAAAGAATCAAGGGAACAGGAAAACATCAACAGTCAAATATCCTGGCAGCAGGCAAAGAAGAA TTCCTGCAGAAGACAGAATC
Product: regulatory protein GntR HTH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MTSLPASSLVETVANKIKQMILSGSLVNILPGERELGHRLSVGRETIRKALTLLERDAWIAPPRIKVPRRILKTTEEETV KNIFCHPVQEKKEILGFLTPQPLKRLAQSVLAEIYTISKILEEDGISVRIFEAPWILGNNPDKRLAKLVTKSECVCWILH RSSEQTQLWFKTHRIPCIVRGTSYQSSNLPYLDRHWAATTHHAAQHLWNKGHRTVGLCLPPDPLKGHQLMQKGFFSFAEQ GWNPILVPTPFETPLFFEYLAKAFKEHPDMSALVATRGNQIVPILSWVEARSLSIPDQLSLVSLTYEPFMERLLPTITYY EENQTKTVHKLIRMLRSLTAGKNIKSISVIPEIYPGQSVSLHAPSA
Sequences:
>Translated_366_residues MTSLPASSLVETVANKIKQMILSGSLVNILPGERELGHRLSVGRETIRKALTLLERDAWIAPPRIKVPRRILKTTEEETV KNIFCHPVQEKKEILGFLTPQPLKRLAQSVLAEIYTISKILEEDGISVRIFEAPWILGNNPDKRLAKLVTKSECVCWILH RSSEQTQLWFKTHRIPCIVRGTSYQSSNLPYLDRHWAATTHHAAQHLWNKGHRTVGLCLPPDPLKGHQLMQKGFFSFAEQ GWNPILVPTPFETPLFFEYLAKAFKEHPDMSALVATRGNQIVPILSWVEARSLSIPDQLSLVSLTYEPFMERLLPTITYY EENQTKTVHKLIRMLRSLTAGKNIKSISVIPEIYPGQSVSLHAPSA >Mature_365_residues TSLPASSLVETVANKIKQMILSGSLVNILPGERELGHRLSVGRETIRKALTLLERDAWIAPPRIKVPRRILKTTEEETVK NIFCHPVQEKKEILGFLTPQPLKRLAQSVLAEIYTISKILEEDGISVRIFEAPWILGNNPDKRLAKLVTKSECVCWILHR SSEQTQLWFKTHRIPCIVRGTSYQSSNLPYLDRHWAATTHHAAQHLWNKGHRTVGLCLPPDPLKGHQLMQKGFFSFAEQG WNPILVPTPFETPLFFEYLAKAFKEHPDMSALVATRGNQIVPILSWVEARSLSIPDQLSLVSLTYEPFMERLLPTITYYE ENQTKTVHKLIRMLRSLTAGKNIKSISVIPEIYPGQSVSLHAPSA
Specific function: Unknown
COG id: COG1609
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41527; Mature: 41396
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLPASSLVETVANKIKQMILSGSLVNILPGERELGHRLSVGRETIRKALTLLERDAWI CCCCCHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC APPRIKVPRRILKTTEEETVKNIFCHPVQEKKEILGFLTPQPLKRLAQSVLAEIYTISKI CCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH LEEDGISVRIFEAPWILGNNPDKRLAKLVTKSECVCWILHRSSEQTQLWFKTHRIPCIVR HHHCCCEEEEEECCEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCEEHHEECCCEEEEE GTSYQSSNLPYLDRHWAATTHHAAQHLWNKGHRTVGLCLPPDPLKGHQLMQKGFFSFAEQ CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC GWNPILVPTPFETPLFFEYLAKAFKEHPDMSALVATRGNQIVPILSWVEARSLSIPDQLS CCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEHHHHHHHHHCCCCCCCHH LVSLTYEPFMERLLPTITYYEENQTKTVHKLIRMLRSLTAGKNIKSISVIPEIYPGQSVS HEEEEHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEE LHAPSA EECCCC >Mature Secondary Structure TSLPASSLVETVANKIKQMILSGSLVNILPGERELGHRLSVGRETIRKALTLLERDAWI CCCCHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC APPRIKVPRRILKTTEEETVKNIFCHPVQEKKEILGFLTPQPLKRLAQSVLAEIYTISKI CCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH LEEDGISVRIFEAPWILGNNPDKRLAKLVTKSECVCWILHRSSEQTQLWFKTHRIPCIVR HHHCCCEEEEEECCEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCEEHHEECCCEEEEE GTSYQSSNLPYLDRHWAATTHHAAQHLWNKGHRTVGLCLPPDPLKGHQLMQKGFFSFAEQ CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC GWNPILVPTPFETPLFFEYLAKAFKEHPDMSALVATRGNQIVPILSWVEARSLSIPDQLS CCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEHHHHHHHHHCCCCCCCHH LVSLTYEPFMERLLPTITYYEENQTKTVHKLIRMLRSLTAGKNIKSISVIPEIYPGQSVS HEEEEHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEE LHAPSA EECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA