Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736129
Identifier: 187736129
GI number: 187736129
Start: 1983349
End: 1984077
Strand: Direct
Name: 187736129
Synonym: Amuc_1640
Alternate gene names: NA
Gene position: 1983349-1984077 (Clockwise)
Preceding gene: 187736128
Following gene: 187736130
Centisome position: 74.45
GC content: 55.83
Gene sequence:
>729_bases ATGCTGCTGCTCAATCCTATTGTTCGGAAAACATCTGAAAAGCGTTCCCGCTGGTGGACCAGGCTGGCCGGATTTGGCCT GTGGTCCGTACTCCAGCCCATTTGCATGAGCCTGAATATCCGTTCCATCAAGGAGGAGCATGATGATGTTTATACGGCGC CTTTTCTGGTAGCCCTTTGGCACAACCGCACGATGGTGCCGGGTTATGCGTGGTCCCTGGCCCAGAAGCCGCTCAAGATG AGTGTGCTTACCAGCGCCAGCAAGGACGGCGCCCTGGTGGAGGCCGTATGCAGGCATTTTGGCCTGGGTGCCGTCCGGGG ATCTTCCGGACGGCGGGGGGCTCTGGCCTACATGGAAATGATGCGAAAGGTCCAGGAGGGGGACGTCTGCTTCTGTTTTA CTCCGGATGGTCCGCGAGGCCCTATTTACGAAGTGCACCACGGTATTGTCAAACTGGCCTCCCAGTCAGGGCTGCCCATC GTTCCCGTATGCATCGAATATGAAAGCTGCTGGCGTTTGAACAAGACCTGGGACCGCTATGCCATTCCCAAACCGTGTTC CAACGTAAATATTCTATGGAAAAAGCGCCTGTTCATTCCTCCGGACGCGACGGATGAACAGGTGGCGGATTATGCCCGTC TTCTGGCCGGGCTGCTTGGCGAGGGGCTTCCGGACTTCCCGCCTCTTAACCAATCATTATTATGCAAATCATCGATGGAA AACAAGTAG
Upstream 100 bases:
>100_bases GCATACCGCTCCTTCCCGTGGAATAGCTCTTCCAGCTCCGTCAAATTCCTCTCCTTCCCGTATTACGGTAGACGGATTCA TGTGATATTGCCAGGACTCC
Downstream 100 bases:
>100_bases CTTCCCAGGTGCTGGAAGAGGTTGAAAGGGATATTGCCCGGCTCAGGGAACAGGGAATAACGCCCGGCTTGGCCGTGGTT CTGGTAGGGGAAGATCCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MLLLNPIVRKTSEKRSRWWTRLAGFGLWSVLQPICMSLNIRSIKEEHDDVYTAPFLVALWHNRTMVPGYAWSLAQKPLKM SVLTSASKDGALVEAVCRHFGLGAVRGSSGRRGALAYMEMMRKVQEGDVCFCFTPDGPRGPIYEVHHGIVKLASQSGLPI VPVCIEYESCWRLNKTWDRYAIPKPCSNVNILWKKRLFIPPDATDEQVADYARLLAGLLGEGLPDFPPLNQSLLCKSSME NK
Sequences:
>Translated_242_residues MLLLNPIVRKTSEKRSRWWTRLAGFGLWSVLQPICMSLNIRSIKEEHDDVYTAPFLVALWHNRTMVPGYAWSLAQKPLKM SVLTSASKDGALVEAVCRHFGLGAVRGSSGRRGALAYMEMMRKVQEGDVCFCFTPDGPRGPIYEVHHGIVKLASQSGLPI VPVCIEYESCWRLNKTWDRYAIPKPCSNVNILWKKRLFIPPDATDEQVADYARLLAGLLGEGLPDFPPLNQSLLCKSSME NK >Mature_242_residues MLLLNPIVRKTSEKRSRWWTRLAGFGLWSVLQPICMSLNIRSIKEEHDDVYTAPFLVALWHNRTMVPGYAWSLAQKPLKM SVLTSASKDGALVEAVCRHFGLGAVRGSSGRRGALAYMEMMRKVQEGDVCFCFTPDGPRGPIYEVHHGIVKLASQSGLPI VPVCIEYESCWRLNKTWDRYAIPKPCSNVNILWKKRLFIPPDATDEQVADYARLLAGLLGEGLPDFPPLNQSLLCKSSME NK
Specific function: Unknown
COG id: COG2121
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To H.pylori HP0270 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007172 - ProDom: PD032436 [H]
Pfam domain/function: PF04028 DUF374 [H]
EC number: NA
Molecular weight: Translated: 27220; Mature: 27220
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLLNPIVRKTSEKRSRWWTRLAGFGLWSVLQPICMSLNIRSIKEEHDDVYTAPFLVALW CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHH HNRTMVPGYAWSLAQKPLKMSVLTSASKDGALVEAVCRHFGLGAVRGSSGRRGALAYMEM CCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHHHH MRKVQEGDVCFCFTPDGPRGPIYEVHHGIVKLASQSGLPIVPVCIEYESCWRLNKTWDRY HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCHHHC AIPKPCSNVNILWKKRLFIPPDATDEQVADYARLLAGLLGEGLPDFPPLNQSLLCKSSME CCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC NK CC >Mature Secondary Structure MLLLNPIVRKTSEKRSRWWTRLAGFGLWSVLQPICMSLNIRSIKEEHDDVYTAPFLVALW CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHH HNRTMVPGYAWSLAQKPLKMSVLTSASKDGALVEAVCRHFGLGAVRGSSGRRGALAYMEM CCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCHHHHHHHH MRKVQEGDVCFCFTPDGPRGPIYEVHHGIVKLASQSGLPIVPVCIEYESCWRLNKTWDRY HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCHHHC AIPKPCSNVNILWKKRLFIPPDATDEQVADYARLLAGLLGEGLPDFPPLNQSLLCKSSME CCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC NK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]