Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736128
Identifier: 187736128
GI number: 187736128
Start: 1981750
End: 1983333
Strand: Direct
Name: 187736128
Synonym: Amuc_1639
Alternate gene names: NA
Gene position: 1981750-1983333 (Clockwise)
Preceding gene: 187736127
Following gene: 187736129
Centisome position: 74.39
GC content: 54.17
Gene sequence:
>1584_bases ATGCGTCAGCTGCATGCGTCGGATTCCCACGGAGTAGAACGGAGAAGGGAAGTAGTAGTGCGCCCGGACGGCAGCAAGGT GATCCGGGTGGAAAAGCGTCGGCGGACTTACAGTGACGACCAGCGGGACGCCAAACAGGCCATGTTGAAAAACAAGCGTT TTTTAATAGGCCTTTGCATTCTGGTTCTGCTGGCTGCCGGTGCGCTGGCGGGGACGTATATGTACCGCCTTACTTCTTTC AATACGGAGGAATTTGCTGGCCGTCTGCAAGCTGATCTTTCCGCCGCCTGGGGCGGAGAAGTGAAAATTTCCGGAATGGC GGTGGATGGCCTTACCATGAAGGCTTCACGCATCAGGATATCCTTTCCGGAAGATTCCTGCCTGTCCTTTGTGGCGATGG AAGGCATCTCCGGGGAAATTTCCGCCGTGCCCTTGTTCATGGGGAAAATCAAGGGGGAAAGCCTTAATGTGTCCAGGGCG GTAGTCGGTTTGCGGCCCGGATTCGTTAAATTTGCCGTACCGCAGACGAAACGGGAATTGCCGTTCGTTTTCCGGCGATA CACAGCGCCGCGTCTGGAAGTGGGGTATGCCCATGGGACGGAAGAATTTACTCTGGAGAGGAATGGCGCTCCCTTTTATA TGACGGCGGAAGCCTACATCCGCACGTCCGGGAACGGACCTGAACCGGAATACGTGCTGGATCTGTCACAGCAAAAATTG AAAATCAAGGGCTGGCCACTGATGGGGGTTGATTCCGGTTCCGTCATTCTAAACGGGAGCGGCGTCAAGCAGCTCACTTT TTCCGGTTTTCTGGACAAAGGGCGCCTGCTCAATAAGCCTACGGATCTCAGCCCCTTCATGATTACGGGGAATTTCCTTC TGGGTACGGATTTCCGTCACCAGGCGTGGACTTTGACAGGAAAAAATTTCGATCTCGCTTCCCTGCTGGGAGATGATTTC TCTTCCCTTCTCAAGGTGCAGACGGGAGAACAGGAAGGGGATGAAAAGCATGAATTGAAGCTGGATTTTGCTTTGCCTGT AACAACTGAACAGAAGAGGCCCTCCCTAAAAGGATACAGCGGTTCCGTTATCAAGGCGACCATGATCAGGCTGCCTGTTT TGCGCCTGCTGGCGGCCATGACTGCCCGGAATACGGAAATAAGGCTGCCGTACTCTTCTCCCGTCTTTACGTCCGGTTCT TTCCTGCTGGAAAGCGATGGAACGGGCCGTTCCGCCTCCCTGAAGGAAATTTCCCTGTTTGAGCAGGGCTTTCTGGGAGT GACCGGGGGGGTGTACAGCAACGGTACTTCCTTGACGGGGAAGCTGGTTTTTAAAATTCCTTCCTACATGGTGGACAGTC GGAAACTGCCTTCCGGCGTGACGCAGGAAGGGCATGAAATTATTCTTCCTGTGAAAATTTCCGGTACTCCGGAGTCTCCA CAGGACAACTCTGCCGGAATGTTCCAGGAAGAGGCGCCGCGCACGGGCCGCCCGGAAATGCATACCGCTCCTTCCCGTGG AATAGCTCTTCCAGCTCCGTCAAATTCCTCTCCTTCCCGTATTACGGTAGACGGATTCATGTGA
Upstream 100 bases:
>100_bases CGCCCTCAGCAATGCCCAGTAACCTTTAACCGGATCAAGACCATTGAAAAACAGCGGTTCCGATTTTGAGTCTTCTCCGC CCCAGGGGGCTGATAATATC
Downstream 100 bases:
>100_bases TATTGCCAGGACTCCATGCTGCTGCTCAATCCTATTGTTCGGAAAACATCTGAAAAGCGTTCCCGCTGGTGGACCAGGCT GGCCGGATTTGGCCTGTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MRQLHASDSHGVERRREVVVRPDGSKVIRVEKRRRTYSDDQRDAKQAMLKNKRFLIGLCILVLLAAGALAGTYMYRLTSF NTEEFAGRLQADLSAAWGGEVKISGMAVDGLTMKASRIRISFPEDSCLSFVAMEGISGEISAVPLFMGKIKGESLNVSRA VVGLRPGFVKFAVPQTKRELPFVFRRYTAPRLEVGYAHGTEEFTLERNGAPFYMTAEAYIRTSGNGPEPEYVLDLSQQKL KIKGWPLMGVDSGSVILNGSGVKQLTFSGFLDKGRLLNKPTDLSPFMITGNFLLGTDFRHQAWTLTGKNFDLASLLGDDF SSLLKVQTGEQEGDEKHELKLDFALPVTTEQKRPSLKGYSGSVIKATMIRLPVLRLLAAMTARNTEIRLPYSSPVFTSGS FLLESDGTGRSASLKEISLFEQGFLGVTGGVYSNGTSLTGKLVFKIPSYMVDSRKLPSGVTQEGHEIILPVKISGTPESP QDNSAGMFQEEAPRTGRPEMHTAPSRGIALPAPSNSSPSRITVDGFM
Sequences:
>Translated_527_residues MRQLHASDSHGVERRREVVVRPDGSKVIRVEKRRRTYSDDQRDAKQAMLKNKRFLIGLCILVLLAAGALAGTYMYRLTSF NTEEFAGRLQADLSAAWGGEVKISGMAVDGLTMKASRIRISFPEDSCLSFVAMEGISGEISAVPLFMGKIKGESLNVSRA VVGLRPGFVKFAVPQTKRELPFVFRRYTAPRLEVGYAHGTEEFTLERNGAPFYMTAEAYIRTSGNGPEPEYVLDLSQQKL KIKGWPLMGVDSGSVILNGSGVKQLTFSGFLDKGRLLNKPTDLSPFMITGNFLLGTDFRHQAWTLTGKNFDLASLLGDDF SSLLKVQTGEQEGDEKHELKLDFALPVTTEQKRPSLKGYSGSVIKATMIRLPVLRLLAAMTARNTEIRLPYSSPVFTSGS FLLESDGTGRSASLKEISLFEQGFLGVTGGVYSNGTSLTGKLVFKIPSYMVDSRKLPSGVTQEGHEIILPVKISGTPESP QDNSAGMFQEEAPRTGRPEMHTAPSRGIALPAPSNSSPSRITVDGFM >Mature_527_residues MRQLHASDSHGVERRREVVVRPDGSKVIRVEKRRRTYSDDQRDAKQAMLKNKRFLIGLCILVLLAAGALAGTYMYRLTSF NTEEFAGRLQADLSAAWGGEVKISGMAVDGLTMKASRIRISFPEDSCLSFVAMEGISGEISAVPLFMGKIKGESLNVSRA VVGLRPGFVKFAVPQTKRELPFVFRRYTAPRLEVGYAHGTEEFTLERNGAPFYMTAEAYIRTSGNGPEPEYVLDLSQQKL KIKGWPLMGVDSGSVILNGSGVKQLTFSGFLDKGRLLNKPTDLSPFMITGNFLLGTDFRHQAWTLTGKNFDLASLLGDDF SSLLKVQTGEQEGDEKHELKLDFALPVTTEQKRPSLKGYSGSVIKATMIRLPVLRLLAAMTARNTEIRLPYSSPVFTSGS FLLESDGTGRSASLKEISLFEQGFLGVTGGVYSNGTSLTGKLVFKIPSYMVDSRKLPSGVTQEGHEIILPVKISGTPESP QDNSAGMFQEEAPRTGRPEMHTAPSRGIALPAPSNSSPSRITVDGFM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57625; Mature: 57625
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQLHASDSHGVERRREVVVRPDGSKVIRVEKRRRTYSDDQRDAKQAMLKNKRFLIGLCI CCCCCCCCCCCCCCCCEEEECCCCCCEEEEEHHCCCCCCHHHHHHHHHHHCCCHHHHHHH LVLLAAGALAGTYMYRLTSFNTEEFAGRLQADLSAAWGGEVKISGMAVDGLTMKASRIRI HHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEEEEE SFPEDSCLSFVAMEGISGEISAVPLFMGKIKGESLNVSRAVVGLRPGFVKFAVPQTKREL ECCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCC PFVFRRYTAPRLEVGYAHGTEEFTLERNGAPFYMTAEAYIRTSGNGPEPEYVLDLSQQKL CHHHHHCCCCCEEEEECCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEECCCCEE KIKGWPLMGVDSGSVILNGSGVKQLTFSGFLDKGRLLNKPTDLSPFMITGNFLLGTDFRH EECCCEEEECCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEECCCCC QAWTLTGKNFDLASLLGDDFSSLLKVQTGEQEGDEKHELKLDFALPVTTEQKRPSLKGYS CEEEEECCCCCHHHHHHHCHHHHHEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC GSVIKATMIRLPVLRLLAAMTARNTEIRLPYSSPVFTSGSFLLESDGTGRSASLKEISLF CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCEEEECCCCCCCCCHHHHHHH EQGFLGVTGGVYSNGTSLTGKLVFKIPSYMVDSRKLPSGVTQEGHEIILPVKISGTPESP HCCCEEECCCEECCCCCEEEEEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCC QDNSAGMFQEEAPRTGRPEMHTAPSRGIALPAPSNSSPSRITVDGFM CCCCCCCCHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCC >Mature Secondary Structure MRQLHASDSHGVERRREVVVRPDGSKVIRVEKRRRTYSDDQRDAKQAMLKNKRFLIGLCI CCCCCCCCCCCCCCCCEEEECCCCCCEEEEEHHCCCCCCHHHHHHHHHHHCCCHHHHHHH LVLLAAGALAGTYMYRLTSFNTEEFAGRLQADLSAAWGGEVKISGMAVDGLTMKASRIRI HHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEEEEE SFPEDSCLSFVAMEGISGEISAVPLFMGKIKGESLNVSRAVVGLRPGFVKFAVPQTKREL ECCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCC PFVFRRYTAPRLEVGYAHGTEEFTLERNGAPFYMTAEAYIRTSGNGPEPEYVLDLSQQKL CHHHHHCCCCCEEEEECCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEECCCCEE KIKGWPLMGVDSGSVILNGSGVKQLTFSGFLDKGRLLNKPTDLSPFMITGNFLLGTDFRH EECCCEEEECCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEECCCCC QAWTLTGKNFDLASLLGDDFSSLLKVQTGEQEGDEKHELKLDFALPVTTEQKRPSLKGYS CEEEEECCCCCHHHHHHHCHHHHHEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC GSVIKATMIRLPVLRLLAAMTARNTEIRLPYSSPVFTSGSFLLESDGTGRSASLKEISLF CCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCEEEECCCCCCCCCHHHHHHH EQGFLGVTGGVYSNGTSLTGKLVFKIPSYMVDSRKLPSGVTQEGHEIILPVKISGTPESP HCCCEEECCCEECCCCCEEEEEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCC QDNSAGMFQEEAPRTGRPEMHTAPSRGIALPAPSNSSPSRITVDGFM CCCCCCCCHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA