Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yqeZ [H]
Identifier: 187736113
GI number: 187736113
Start: 1955744
End: 1957180
Strand: Reverse
Name: yqeZ [H]
Synonym: Amuc_1624
Alternate gene names: 187736113
Gene position: 1957180-1955744 (Counterclockwise)
Preceding gene: 187736119
Following gene: 187736112
Centisome position: 73.46
GC content: 60.54
Gene sequence:
>1437_bases ATGAAGCGCATTCACCTTCTGTTGCTGGCTTTGCTGGCCCTGTTTGCCGGCGCCCCCTTCCGGGCGGCCGCGGAGGAAAC CTTCCGCGACAGGGTAGTCGTCATCCCCGTAGGGGAGGACTCCCTGACCAGCAAACAAAGCTTCGGCTTCATGAACCGCA TCCTGAAAAGGGCGCAGGAGGAGCAGGCTCGCGCGGTAATATTCGATTTGAACACGCCCGGCGGTTTGGCCTGGGAGACC AGCGAGATGATGATGAAAAGCATCCAGCCGCTCACCATTCCCACCTACGCCTACGTAAACCCCAGGGCCATGTCTGCCGG GGCGCTCATCTCCGCGGCGTGCGACAAAATTTACATGGCTCCCGTCTCCTCCATCGGCGCAGCGGGCATCATCACCTCAT CCGGAGAGGAAATGGATACCGTCATGCGCAAGAAAGCGGAAAGCGCCTTCTGGGCCTTTACCCGCTCCGTCGTGACGGAA AAGGGTTACCGCCCGGAAGTGGTGAAAGCCATGATGATCCCGTCCGACCAGGAACAGCAGTTCGGCCCCGTCAAACTGGA AAAAGGCGCGCTCCTGACCCTAACGGGCAAGGAAGCCGCCGCGCGTCTGGAAGACGGCAGGCCCCTGCTGGCCCAGGGCA CAGCCTCCTCCGTCACGGACCTGCTGGCCCAGGAGAAAGTAAATGCCCCCGTGGTCACGGCGGAACCTACGGCCTTTGAG CGCATCGGCCTCTGGATTGCATGGGCTTCCCCCATCCTGATCCTGCTGGGCATCGGCGGCATTTACATGGAATTTAAAAC GCCGGGATTCGGCATCGGCGGCATTGTGGCCATTGCCGCGTTTGCCCTGTTCTTCTTCGGCAACAACATTGCCGGGAATC TGGCCGGCTATGAGACGGCGGCCCTGCTCGTTCTGGGCATAGTCCTTCTTTGCGTGGAATTCTTCGTTATCCCGGGCACA TTCATTGCGGCCATTGCGGGCGGCGTCTGCATCTTTCTGGCCCTGTTCGGCGGCATGGTCAGCTCCTGGGAATGGGACCA TATCATCCGGGACGGACAGTGGGATGACGTCAACACGCTGGCGGCAGTCCTGGGCATCCCCCTTCTGAAACTGGCCCTGG GCCTGACCGGAGGCTCCCTTCTGATTGCCCTGCTGATGAAATACCTCCCGGATTCCATCCTGATGCGCCGCGTTACCAAC GCCACGGTCAGCGGAGGTTCCGCCGGGGAAGCGGTCAATATCGCGCGCGTTCAGGTAGGAGACCGCGGGAACGCAGTCAC GGAGCTGAAACCCAATGGAAAAGCCATGATTCATGGCGAAATATGCGAGGTTTTCTCTCGACAAGGCATACTGATTAAGG GTACCCCTGTGCGCGTCGTGGACATCCGGCCATTCGACCTCGTCGTCGTCAAGGACGACTCCCCCTCCGGGGATTGA
Upstream 100 bases:
>100_bases CCACAGGCAGGGAAAAGACGGCGCAGCACCGGCGGCTTCCCGCCCCGGAGGAACACATTTCCCCATTGAGCGCGGGAGCG GAACATGCTAGCCTGCCCGT
Downstream 100 bases:
>100_bases CGCCATCACGCTTCTTATCTACTGCCATGCCTCTCACCGTTGGACTCATTTCCCTGGGCTGCCCCAAGAATCTGGTTGAC TCTGAAATCATGATCGGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 478; Mature: 478
Protein sequence:
>478_residues MKRIHLLLLALLALFAGAPFRAAAEETFRDRVVVIPVGEDSLTSKQSFGFMNRILKRAQEEQARAVIFDLNTPGGLAWET SEMMMKSIQPLTIPTYAYVNPRAMSAGALISAACDKIYMAPVSSIGAAGIITSSGEEMDTVMRKKAESAFWAFTRSVVTE KGYRPEVVKAMMIPSDQEQQFGPVKLEKGALLTLTGKEAAARLEDGRPLLAQGTASSVTDLLAQEKVNAPVVTAEPTAFE RIGLWIAWASPILILLGIGGIYMEFKTPGFGIGGIVAIAAFALFFFGNNIAGNLAGYETAALLVLGIVLLCVEFFVIPGT FIAAIAGGVCIFLALFGGMVSSWEWDHIIRDGQWDDVNTLAAVLGIPLLKLALGLTGGSLLIALLMKYLPDSILMRRVTN ATVSGGSAGEAVNIARVQVGDRGNAVTELKPNGKAMIHGEICEVFSRQGILIKGTPVRVVDIRPFDLVVVKDDSPSGD
Sequences:
>Translated_478_residues MKRIHLLLLALLALFAGAPFRAAAEETFRDRVVVIPVGEDSLTSKQSFGFMNRILKRAQEEQARAVIFDLNTPGGLAWET SEMMMKSIQPLTIPTYAYVNPRAMSAGALISAACDKIYMAPVSSIGAAGIITSSGEEMDTVMRKKAESAFWAFTRSVVTE KGYRPEVVKAMMIPSDQEQQFGPVKLEKGALLTLTGKEAAARLEDGRPLLAQGTASSVTDLLAQEKVNAPVVTAEPTAFE RIGLWIAWASPILILLGIGGIYMEFKTPGFGIGGIVAIAAFALFFFGNNIAGNLAGYETAALLVLGIVLLCVEFFVIPGT FIAAIAGGVCIFLALFGGMVSSWEWDHIIRDGQWDDVNTLAAVLGIPLLKLALGLTGGSLLIALLMKYLPDSILMRRVTN ATVSGGSAGEAVNIARVQVGDRGNAVTELKPNGKAMIHGEICEVFSRQGILIKGTPVRVVDIRPFDLVVVKDDSPSGD >Mature_478_residues MKRIHLLLLALLALFAGAPFRAAAEETFRDRVVVIPVGEDSLTSKQSFGFMNRILKRAQEEQARAVIFDLNTPGGLAWET SEMMMKSIQPLTIPTYAYVNPRAMSAGALISAACDKIYMAPVSSIGAAGIITSSGEEMDTVMRKKAESAFWAFTRSVVTE KGYRPEVVKAMMIPSDQEQQFGPVKLEKGALLTLTGKEAAARLEDGRPLLAQGTASSVTDLLAQEKVNAPVVTAEPTAFE RIGLWIAWASPILILLGIGGIYMEFKTPGFGIGGIVAIAAFALFFFGNNIAGNLAGYETAALLVLGIVLLCVEFFVIPGT FIAAIAGGVCIFLALFGGMVSSWEWDHIIRDGQWDDVNTLAAVLGIPLLKLALGLTGGSLLIALLMKYLPDSILMRRVTN ATVSGGSAGEAVNIARVQVGDRGNAVTELKPNGKAMIHGEICEVFSRQGILIKGTPVRVVDIRPFDLVVVKDDSPSGD
Specific function: Unknown
COG id: COG1030
COG function: function code O; Membrane-bound serine protease (ClpP class)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002810 - InterPro: IPR002825 [H]
Pfam domain/function: PF01972 DUF114; PF01957 NfeD [H]
EC number: NA
Molecular weight: Translated: 51021; Mature: 51021
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIHLLLLALLALFAGAPFRAAAEETFRDRVVVIPVGEDSLTSKQSFGFMNRILKRAQE CCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH EQARAVIFDLNTPGGLAWETSEMMMKSIQPLTIPTYAYVNPRAMSAGALISAACDKIYMA HCCCEEEEECCCCCCCEECHHHHHHHHCCCCEECEEEEECCCCCCCCHHHHHHHHHHEEC PVSSIGAAGIITSSGEEMDTVMRKKAESAFWAFTRSVVTEKGYRPEVVKAMMIPSDQEQQ CHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCCC FGPVKLEKGALLTLTGKEAAARLEDGRPLLAQGTASSVTDLLAQEKVNAPVVTAEPTAFE CCCEEECCCEEEEEECHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHH RIGLWIAWASPILILLGIGGIYMEFKTPGFGIGGIVAIAAFALFFFGNNIAGNLAGYETA HHHHHEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH ALLVLGIVLLCVEFFVIPGTFIAAIAGGVCIFLALFGGMVSSWEWDHIIRDGQWDDVNTL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHH AAVLGIPLLKLALGLTGGSLLIALLMKYLPDSILMRRVTNATVSGGSAGEAVNIARVQVG HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEC DRGNAVTELKPNGKAMIHGEICEVFSRQGILIKGTPVRVVDIRPFDLVVVKDDSPSGD CCCCEEEEECCCCCEEEEHHHHHHHHCCCEEEECCCEEEEEECCEEEEEEECCCCCCC >Mature Secondary Structure MKRIHLLLLALLALFAGAPFRAAAEETFRDRVVVIPVGEDSLTSKQSFGFMNRILKRAQE CCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH EQARAVIFDLNTPGGLAWETSEMMMKSIQPLTIPTYAYVNPRAMSAGALISAACDKIYMA HCCCEEEEECCCCCCCEECHHHHHHHHCCCCEECEEEEECCCCCCCCHHHHHHHHHHEEC PVSSIGAAGIITSSGEEMDTVMRKKAESAFWAFTRSVVTEKGYRPEVVKAMMIPSDQEQQ CHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCCC FGPVKLEKGALLTLTGKEAAARLEDGRPLLAQGTASSVTDLLAQEKVNAPVVTAEPTAFE CCCEEECCCEEEEEECHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHH RIGLWIAWASPILILLGIGGIYMEFKTPGFGIGGIVAIAAFALFFFGNNIAGNLAGYETA HHHHHEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH ALLVLGIVLLCVEFFVIPGTFIAAIAGGVCIFLALFGGMVSSWEWDHIIRDGQWDDVNTL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHH AAVLGIPLLKLALGLTGGSLLIALLMKYLPDSILMRRVTNATVSGGSAGEAVNIARVQVG HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEC DRGNAVTELKPNGKAMIHGEICEVFSRQGILIKGTPVRVVDIRPFDLVVVKDDSPSGD CCCCEEEEECCCCCEEEEHHHHHHHHCCCEEEECCCEEEEEECCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]