Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is nuoD

Identifier: 187736103

GI number: 187736103

Start: 1939768

End: 1941012

Strand: Reverse

Name: nuoD

Synonym: Amuc_1614

Alternate gene names: 187736103

Gene position: 1941012-1939768 (Counterclockwise)

Preceding gene: 187736105

Following gene: 187736102

Centisome position: 72.86

GC content: 56.14

Gene sequence:

>1245_bases
ATGAAGACGAGCACCAAAACTTTCGCCATTGCAGATACAGCCGCTAACGCAGACTATCTCACCAATACATCCGAACCGCT
CGGAGAAACGATGACCCTGAATGTGGGCCCCTCCCACCCCGCCACCCACGGCGTGCTGCGCCTAGTGCTGGAACTTGATG
GTGAAGAAATCATCAGCTGTGATCCGGTGGTTGGCCATCTGCACCGCGGAATGGAAAAAATAGGCGAAACCATCCAGTAC
AACCAATTTGTTCCCTACACCGACCGTTTTGACTACCTGGCCCCCCTGTCCAACAACATCGCCTATGCCTGCGCGGTGGA
AAAACTGCTGGGATGGGAACTGCCGCCCCGCGGACAGGCCCTGCGCGTACTGGCCCTGGAACTTTCCCGCTTTTCCTCCC
ACATCCTGGGCGTAGGCGTGTACGGCATGGACGTAGGCGCCATGACCGTTTTCCTGTACTGTTATGAGGAACGTGAAAAA
ATCCATAATTTTTACGAACAGCTCACTGGGGCGCGCTTTACTTCCTCCTATACCCGCATCGGCGGACAGACGCGTGATGT
TCCCAATGAAATGCTCAAGGAAGTGCTCGTCTTCTGCGATGAAGCGGCCAAAACCCTTGATGAAACGGAAGCCCTCCTGC
TCAAAAACAAAATCTTCATTGACCGTCTTCAGGGCGTAGGCGTCATCAGCCGTGAAAAAGCGCTTTCCTGGGGTATTACG
GGGGCCAACCTGCGAGCCAGCGGCATTAAGCGGGACCTGCGCAAACTCACCCCCTATCTGGGATATGAAAATTACGAATT
CGACGTCCCCGTAGGCGAACACGGAGACTGCTACGACCGTTTTACCGTGCGCATTGAAGAAATGCGCCAGTCCCTGCGCA
TCATCCGCCAAGTCATTGAAACCATGCCGGACGGCCCCATCAACATGGTGGACACCAAAGGCACGCTGCCTGAAAAGAAA
AAAGTCCTGACGGACATGGAATCCCTGATTCGCCAGTTCATGACGACGACCATGGGGGTGAACGCCCCTGCCGGGCAGGT
TTACTTTGCCGCGGAAAACCCGAAGGGAGAGCTGGGTTTCTTCCTGGACTCCAAGGGGGGCGGGCTTCCCAACCGCCTGC
GCATGCGCTCCCCCTCCTTCTGCAACCTGTCCATCCTGCCGGAACTGATGAAAGGCCACCTGGTTTCCGACGTTCCGGCC
ATTCTCGGCTCCTTCGACTTCGTGATGGGCGAATGCGACCGTTAA

Upstream 100 bases:

>100_bases
CCGGAATGCCAAAAAAACTGACATTTGGCTTGCCCGCATGGTGTGAAGTGGCATAATCATCCGGCACCATTATCAGGTTC
AGCCAGGCACGGACATCCAC

Downstream 100 bases:

>100_bases
ACACCCGCCACTTTCATCCACTTCAACGCAAACACCAAACTTTTTCCCCATGTCCGATTACGCTGAAAACGCCATCGACG
CGACTATCGCCCACCAGCCC

Product: NADH dehydrogenase I, D subunit

Products: NA

Alternate protein names: NADH dehydrogenase I subunit D; NDH-1 subunit D

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISCDPVVGHLHRGMEKIGETIQY
NQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQALRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREK
IHNFYEQLTGARFTSSYTRIGGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT
GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIETMPDGPINMVDTKGTLPEKK
KVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGFFLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPA
ILGSFDFVMGECDR

Sequences:

>Translated_414_residues
MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISCDPVVGHLHRGMEKIGETIQY
NQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQALRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREK
IHNFYEQLTGARFTSSYTRIGGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT
GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIETMPDGPINMVDTKGTLPEKK
KVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGFFLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPA
ILGSFDFVMGECDR
>Mature_414_residues
MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISCDPVVGHLHRGMEKIGETIQY
NQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQALRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREK
IHNFYEQLTGARFTSSYTRIGGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT
GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIETMPDGPINMVDTKGTLPEKK
KVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGFFLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPA
ILGSFDFVMGECDR

Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat

COG id: COG0649

COG function: function code C; NADH:ubiquinone oxidoreductase 49 kD subunit 7

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 49 kDa subunit family

Homologues:

Organism=Homo sapiens, GI4758786, Length=386, Percent_Identity=47.9274611398964, Blast_Score=365, Evalue=1e-101,
Organism=Homo sapiens, GI260898743, Length=380, Percent_Identity=47.3684210526316, Blast_Score=353, Evalue=1e-97,
Organism=Escherichia coli, GI145693162, Length=385, Percent_Identity=42.8571428571429, Blast_Score=332, Evalue=3e-92,
Organism=Escherichia coli, GI1789076, Length=384, Percent_Identity=28.6458333333333, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1788832, Length=388, Percent_Identity=28.6082474226804, Blast_Score=147, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17555284, Length=409, Percent_Identity=42.5427872860636, Blast_Score=358, Evalue=2e-99,
Organism=Caenorhabditis elegans, GI17568379, Length=409, Percent_Identity=42.7872860635697, Blast_Score=357, Evalue=6e-99,
Organism=Drosophila melanogaster, GI24638644, Length=384, Percent_Identity=46.6145833333333, Blast_Score=375, Evalue=1e-104,
Organism=Drosophila melanogaster, GI221459469, Length=385, Percent_Identity=44.6753246753247, Blast_Score=354, Evalue=5e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NUOD_AKKM8 (B2ULZ0)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001878215.1
- ProteinModelPortal:   B2ULZ0
- SMR:   B2ULZ0
- GeneID:   6275404
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_1614
- HOGENOM:   HBG459705
- OMA:   GVFIQGN
- ProtClustDB:   CLSK2335533
- GO:   GO:0006810
- HAMAP:   MF_01358
- InterPro:   IPR010219
- InterPro:   IPR001135
- InterPro:   IPR022885
- TIGRFAMs:   TIGR01962

Pfam domain/function: PF00346 Complex1_49kDa

EC number: =1.6.99.5

Molecular weight: Translated: 46176; Mature: 46176

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00535 COMPLEX1_49K

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISC
CCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEC
DPVVGHLHRGMEKIGETIQYNQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQA
CHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHCCCCCCEEHHHHHHHHHCCCCCCCCCH
LRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREKIHNFYEQLTGARFTSSYTRI
HHHHHHHHHHHHHHHHEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
GGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCC
GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIE
CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TMPDGPINMVDTKGTLPEKKKVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGF
HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEE
FLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPAILGSFDFVMGECDR
EEECCCCCCCCHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCC
>Mature Secondary Structure
MKTSTKTFAIADTAANADYLTNTSEPLGETMTLNVGPSHPATHGVLRLVLELDGEEIISC
CCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEC
DPVVGHLHRGMEKIGETIQYNQFVPYTDRFDYLAPLSNNIAYACAVEKLLGWELPPRGQA
CHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHCCCCCCEEHHHHHHHHHCCCCCCCCCH
LRVLALELSRFSSHILGVGVYGMDVGAMTVFLYCYEEREKIHNFYEQLTGARFTSSYTRI
HHHHHHHHHHHHHHHHEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
GGQTRDVPNEMLKEVLVFCDEAAKTLDETEALLLKNKIFIDRLQGVGVISREKALSWGIT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCC
GANLRASGIKRDLRKLTPYLGYENYEFDVPVGEHGDCYDRFTVRIEEMRQSLRIIRQVIE
CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TMPDGPINMVDTKGTLPEKKKVLTDMESLIRQFMTTTMGVNAPAGQVYFAAENPKGELGF
HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEE
FLDSKGGGLPNRLRMRSPSFCNLSILPELMKGHLVSDVPAILGSFDFVMGECDR
EEECCCCCCCCHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA