Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is yxkH [H]

Identifier: 187736105

GI number: 187736105

Start: 1942800

End: 1944266

Strand: Reverse

Name: yxkH [H]

Synonym: Amuc_1616

Alternate gene names: 187736105

Gene position: 1944266-1942800 (Counterclockwise)

Preceding gene: 187736108

Following gene: 187736103

Centisome position: 72.98

GC content: 58.28

Gene sequence:

>1467_bases
ATGCGCTCCGTCCCAGGCCTCCTTTCCGTTTTCTTGATCGCAGCCGGTGTCGCATGTGCGGAGCTTCCGCCCGACCTGCC
GCCGGCGTCTCCCCTTCCCTTTGCTCCCGGCCCGGTCATCGGGGGAACCATCAAGGGAAACCCGGCCGCCGGCATCGTTC
CCGTCAAAGACCTGATTGAAGCCAACCGCAAGGATGAATACATCCCCATGGCGGAACCCATTCCCGGAGAGACAGGCTCT
TCCGCTCCCCTGGCGGAGTCCATCCCTAACGCGGAACCCATTCCCGGGGAAACGAACCTGCACGCCCCGGTACAACCTGC
GGAGGCACCCCTTGCCATTCCCTCCACGGCTTTTTCCCCCGTTCCGGTTCCTCAGCCTGAAACCCGCGTAGCCATTCTGG
GTTACCATGATTTCAGCCGCACCCTTCCCGCTACGGAAATGCGCATGAATACGGATGTATTCCGCTCTCAGATGCAGGCG
CTGAAGGCGTCCGGAGTGCCCGTCATCTCCATGAAGGAATTCCTGGAATGGAAACTGGGGGACAGGCAGCTTCCGGCCAA
ATGCGTCATGATCACCATCGATGACGGCTGGAAGAGCGTCTACACGGACGCCTATCCCATCCTGAAAGAAACGGGATTCC
CCTTTACCATTTTCCCATACACCAAATTCATCACGGGCCGCGGTTCTGCCATGAGCCCCGCCCAGATTCAGGAAATGCTG
AATAACGGCGCCACCCTGGGCAGCCACTCCGTCAGCCACCTGTACCCAAGATCCTGGAGGGCCGCCCAGCGGAAAGGTAC
ACAAGCGGTTCTGGATCTGGCAACGGCGGAAATAGGCAATTCCCGGAAAATCCTTCAGGAAAAATTCCCCGGTTCTTCCG
TGGAGGCCTATTGCTATCCTGGCGGCTTCATCCTGCCGGAAATGATCTCCAAGGCGGAAGACGCCGGATTCCAGGCGGCC
TTTACGGTAATCCCCAAAAAAGTGACCAAGGACACGGACCGCTGGCGGATTCACCGCTACATGGTCTTCGGCAAAGACCC
TAAGACATTTACCAGAGCCCTGAATTTCAACGTTCCCTCCACTCCGGAAACTCCGGCGGCCACCCCTGGCAACAGCAGCG
GGAAAAAGATGAATTCCTACCCGGCCCCGGCCCAGCCCGTTTATCCGGCCGCCAATACCGTGGTGAAAAACCAGACTCCC
GATATATCCATTTCCCTGGCAGGGGAACCCTCCTTGGAACCCAAGCAAATGGAAATGCGCGTCTCCGGCTTCGGCCTGGT
AAACGCCCGGTACGACGCCAAGGAAAAAATTTTGAAATGGACTCCCTCCCGTCCCCTGCGGCTCAGCCCCGTAACCGTCC
AGGTCCGTTGGAAAAATCCTGCTGTCAACATGTGGCAAACGGCCACCTGGCAATTCGGCATCGAGGAACAGGAAATGCAC
TTCACTCCCCGGAACATAGTCAAATAG

Upstream 100 bases:

>100_bases
CCAGACATGCCCCGGAAAAAACGCGCGCGGCACGGAACAGGCTGTCATGCCTGCCTGAGTTTAAGGTTGAACAGAAAACT
TAAAAATAGTAGTTGCAGAT

Downstream 100 bases:

>100_bases
CCATTTTCCCTCAGGGCTTTTTCACCACCAGTTTGCGGATGCCAAACCGGCGGTTGGTATCCGGCCCTCCCCAATTCCCA
TCCGTTCCGGACACTTTTCC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIEANRKDEYIPMAEPIPGETGS
SAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSPVPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQA
LKASGVPVISMKEFLEWKLGDRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML
NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYPGGFILPEMISKAEDAGFQAA
FTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPSTPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTP
DISISLAGEPSLEPKQMEMRVSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH
FTPRNIVK

Sequences:

>Translated_488_residues
MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIEANRKDEYIPMAEPIPGETGS
SAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSPVPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQA
LKASGVPVISMKEFLEWKLGDRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML
NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYPGGFILPEMISKAEDAGFQAA
FTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPSTPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTP
DISISLAGEPSLEPKQMEMRVSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH
FTPRNIVK
>Mature_488_residues
MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIEANRKDEYIPMAEPIPGETGS
SAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSPVPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQA
LKASGVPVISMKEFLEWKLGDRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML
NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYPGGFILPEMISKAEDAGFQAA
FTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPSTPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTP
DISISLAGEPSLEPKQMEMRVSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH
FTPRNIVK

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=219, Percent_Identity=30.1369863013699, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 53204; Mature: 53204

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIE
CCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHH
ANRKDEYIPMAEPIPGETGSSAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSP
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
VPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQALKASGVPVISMKEFLEWKLG
CCCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCC
DRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML
CCCCCCEEEEEEEECCCHHHHHCCHHHHHHCCCCEEECCCEEEEECCCCCCCHHHHHHHH
NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYP
HCCCCCCCCCHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEC
GGFILPEMISKAEDAGFQAAFTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPS
CCCHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCEEEEEEEEECCCCHHHHHEEECCCCC
TPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTPDISISLAGEPSLEPKQMEMR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHEEEE
VSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH
ECCEEEEECCCCHHHHHHCCCCCCCEEECCEEEEEEECCCCCCCEEEEEEEECCCCCCEE
FTPRNIVK
CCHHHHCC
>Mature Secondary Structure
MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIE
CCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHH
ANRKDEYIPMAEPIPGETGSSAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSP
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
VPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQALKASGVPVISMKEFLEWKLG
CCCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCC
DRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML
CCCCCCEEEEEEEECCCHHHHHCCHHHHHHCCCCEEECCCEEEEECCCCCCCHHHHHHHH
NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYP
HCCCCCCCCCHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEC
GGFILPEMISKAEDAGFQAAFTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPS
CCCHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCEEEEEEEEECCCCHHHHHEEECCCCC
TPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTPDISISLAGEPSLEPKQMEMR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHEEEE
VSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH
ECCEEEEECCCCHHHHHHCCCCCCCEEECCEEEEEEECCCCCCCEEEEEEEECCCCCCEE
FTPRNIVK
CCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]