Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yxkH [H]
Identifier: 187736105
GI number: 187736105
Start: 1942800
End: 1944266
Strand: Reverse
Name: yxkH [H]
Synonym: Amuc_1616
Alternate gene names: 187736105
Gene position: 1944266-1942800 (Counterclockwise)
Preceding gene: 187736108
Following gene: 187736103
Centisome position: 72.98
GC content: 58.28
Gene sequence:
>1467_bases ATGCGCTCCGTCCCAGGCCTCCTTTCCGTTTTCTTGATCGCAGCCGGTGTCGCATGTGCGGAGCTTCCGCCCGACCTGCC GCCGGCGTCTCCCCTTCCCTTTGCTCCCGGCCCGGTCATCGGGGGAACCATCAAGGGAAACCCGGCCGCCGGCATCGTTC CCGTCAAAGACCTGATTGAAGCCAACCGCAAGGATGAATACATCCCCATGGCGGAACCCATTCCCGGAGAGACAGGCTCT TCCGCTCCCCTGGCGGAGTCCATCCCTAACGCGGAACCCATTCCCGGGGAAACGAACCTGCACGCCCCGGTACAACCTGC GGAGGCACCCCTTGCCATTCCCTCCACGGCTTTTTCCCCCGTTCCGGTTCCTCAGCCTGAAACCCGCGTAGCCATTCTGG GTTACCATGATTTCAGCCGCACCCTTCCCGCTACGGAAATGCGCATGAATACGGATGTATTCCGCTCTCAGATGCAGGCG CTGAAGGCGTCCGGAGTGCCCGTCATCTCCATGAAGGAATTCCTGGAATGGAAACTGGGGGACAGGCAGCTTCCGGCCAA ATGCGTCATGATCACCATCGATGACGGCTGGAAGAGCGTCTACACGGACGCCTATCCCATCCTGAAAGAAACGGGATTCC CCTTTACCATTTTCCCATACACCAAATTCATCACGGGCCGCGGTTCTGCCATGAGCCCCGCCCAGATTCAGGAAATGCTG AATAACGGCGCCACCCTGGGCAGCCACTCCGTCAGCCACCTGTACCCAAGATCCTGGAGGGCCGCCCAGCGGAAAGGTAC ACAAGCGGTTCTGGATCTGGCAACGGCGGAAATAGGCAATTCCCGGAAAATCCTTCAGGAAAAATTCCCCGGTTCTTCCG TGGAGGCCTATTGCTATCCTGGCGGCTTCATCCTGCCGGAAATGATCTCCAAGGCGGAAGACGCCGGATTCCAGGCGGCC TTTACGGTAATCCCCAAAAAAGTGACCAAGGACACGGACCGCTGGCGGATTCACCGCTACATGGTCTTCGGCAAAGACCC TAAGACATTTACCAGAGCCCTGAATTTCAACGTTCCCTCCACTCCGGAAACTCCGGCGGCCACCCCTGGCAACAGCAGCG GGAAAAAGATGAATTCCTACCCGGCCCCGGCCCAGCCCGTTTATCCGGCCGCCAATACCGTGGTGAAAAACCAGACTCCC GATATATCCATTTCCCTGGCAGGGGAACCCTCCTTGGAACCCAAGCAAATGGAAATGCGCGTCTCCGGCTTCGGCCTGGT AAACGCCCGGTACGACGCCAAGGAAAAAATTTTGAAATGGACTCCCTCCCGTCCCCTGCGGCTCAGCCCCGTAACCGTCC AGGTCCGTTGGAAAAATCCTGCTGTCAACATGTGGCAAACGGCCACCTGGCAATTCGGCATCGAGGAACAGGAAATGCAC TTCACTCCCCGGAACATAGTCAAATAG
Upstream 100 bases:
>100_bases CCAGACATGCCCCGGAAAAAACGCGCGCGGCACGGAACAGGCTGTCATGCCTGCCTGAGTTTAAGGTTGAACAGAAAACT TAAAAATAGTAGTTGCAGAT
Downstream 100 bases:
>100_bases CCATTTTCCCTCAGGGCTTTTTCACCACCAGTTTGCGGATGCCAAACCGGCGGTTGGTATCCGGCCCTCCCCAATTCCCA TCCGTTCCGGACACTTTTCC
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 488; Mature: 488
Protein sequence:
>488_residues MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIEANRKDEYIPMAEPIPGETGS SAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSPVPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQA LKASGVPVISMKEFLEWKLGDRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYPGGFILPEMISKAEDAGFQAA FTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPSTPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTP DISISLAGEPSLEPKQMEMRVSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH FTPRNIVK
Sequences:
>Translated_488_residues MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIEANRKDEYIPMAEPIPGETGS SAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSPVPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQA LKASGVPVISMKEFLEWKLGDRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYPGGFILPEMISKAEDAGFQAA FTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPSTPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTP DISISLAGEPSLEPKQMEMRVSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH FTPRNIVK >Mature_488_residues MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIEANRKDEYIPMAEPIPGETGS SAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSPVPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQA LKASGVPVISMKEFLEWKLGDRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYPGGFILPEMISKAEDAGFQAA FTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPSTPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTP DISISLAGEPSLEPKQMEMRVSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH FTPRNIVK
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide deacetylase family [H]
Homologues:
Organism=Escherichia coli, GI1786322, Length=219, Percent_Identity=30.1369863013699, Blast_Score=73, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011330 - InterPro: IPR002509 [H]
Pfam domain/function: PF01522 Polysacc_deac_1 [H]
EC number: NA
Molecular weight: Translated: 53204; Mature: 53204
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIE CCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHH ANRKDEYIPMAEPIPGETGSSAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSP CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC VPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQALKASGVPVISMKEFLEWKLG CCCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCC DRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML CCCCCCEEEEEEEECCCHHHHHCCHHHHHHCCCCEEECCCEEEEECCCCCCCHHHHHHHH NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYP HCCCCCCCCCHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEC GGFILPEMISKAEDAGFQAAFTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPS CCCHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCEEEEEEEEECCCCHHHHHEEECCCCC TPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTPDISISLAGEPSLEPKQMEMR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHEEEE VSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH ECCEEEEECCCCHHHHHHCCCCCCCEEECCEEEEEEECCCCCCCEEEEEEEECCCCCCEE FTPRNIVK CCHHHHCC >Mature Secondary Structure MRSVPGLLSVFLIAAGVACAELPPDLPPASPLPFAPGPVIGGTIKGNPAAGIVPVKDLIE CCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHH ANRKDEYIPMAEPIPGETGSSAPLAESIPNAEPIPGETNLHAPVQPAEAPLAIPSTAFSP CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC VPVPQPETRVAILGYHDFSRTLPATEMRMNTDVFRSQMQALKASGVPVISMKEFLEWKLG CCCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCC DRQLPAKCVMITIDDGWKSVYTDAYPILKETGFPFTIFPYTKFITGRGSAMSPAQIQEML CCCCCCEEEEEEEECCCHHHHHCCHHHHHHCCCCEEECCCEEEEECCCCCCCHHHHHHHH NNGATLGSHSVSHLYPRSWRAAQRKGTQAVLDLATAEIGNSRKILQEKFPGSSVEAYCYP HCCCCCCCCCHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEC GGFILPEMISKAEDAGFQAAFTVIPKKVTKDTDRWRIHRYMVFGKDPKTFTRALNFNVPS CCCHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCEEEEEEEEECCCCHHHHHEEECCCCC TPETPAATPGNSSGKKMNSYPAPAQPVYPAANTVVKNQTPDISISLAGEPSLEPKQMEMR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHEEEE VSGFGLVNARYDAKEKILKWTPSRPLRLSPVTVQVRWKNPAVNMWQTATWQFGIEEQEMH ECCEEEEECCCCHHHHHHCCCCCCCEEECCEEEEEEECCCCCCCEEEEEEEECCCCCCEE FTPRNIVK CCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]