Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ispB [H]
Identifier: 187736086
GI number: 187736086
Start: 1920740
End: 1921750
Strand: Direct
Name: ispB [H]
Synonym: Amuc_1597
Alternate gene names: 187736086
Gene position: 1920740-1921750 (Clockwise)
Preceding gene: 187736069
Following gene: 187736089
Centisome position: 72.1
GC content: 54.9
Gene sequence:
>1011_bases ATGTCCATTCCGTTCTTTTCGAAATTACGATCCCAGAAGCATTATCTTCAACTGGTTAAACCGGAATTGAAGCAGGTTTC CGAGTTTGTTGAAGCGCAATCATCATGTTTTGACCCGGAAGTGGCCGATTACATGGAAACGGTATGCCAGTCCAAGGGTA AAATGCTCCGTCCGGCCCTGGTTCTGCTGGTTGCCGGCGCTACGGGCGGCATCAAGCCTGCCCATATCCGCCTGGGTGCT TTGCTGGAAATGGTGCATCTGGCTTCCCTTGTGCATGATGACGTGATTGACGAGGCCGACAAACGCCGGGACGAGGCTAC GGCGAATGCCCTCTGGGGCAACAGCCTCGCCGTACTGCTGGGGGATGTCCTCTTTTCCCACGCCATGGTGCTGGGTACGG AATTCGGCAGCACGGAATTCTGCCGCAGGCTGGCGAATACCGTCAGGAACGTATGCCAGGGGGAGGTAGCCCAGTCCAGC CGCCTGTATGATCTGAGCATGACCCGCGAGGAATATTTTGAAATCATCCGGAAAAAAACCGCTTCCCTTTTCTCCGCAGC TACGGGGGGGGCTGGCTGGATTTCCGGAGTAACCCCGGAAGTGGAGGAATCCCTTTACCAGCTGGGGGATCTGCTGGGTG TGGCTTACCAGATTTACGACGACTGCCTGGACATGGTGGGAGATGAAGACGATGCCGGAAAGACGCTTCATACGGATGCC ACCAAGGGCAAGCTGACCCTTCCCATCTTCAATTTGCTGGAATGCGGTGACAGGAATGTGGAAGCTACCCTGCGGGACGC CATTGAAAACCGTGAAGTGGTGGATTACTCCGCCTTTCAGGACAATCCCGTTTTTGCAGAGGCTCTGGACAAGGCGATTC AGGTAGCTCTGGAGAAAAACGAGGCGGCCCGCGAAATTCTGTGGCTCCTTCCCCAAACGGAATATCGTGAAGCTTTGGCG GAAATGACCTTTTACATGGACGAGCTGCTTAACGACTGCCGTATCTCCTGA
Upstream 100 bases:
>100_bases TCCGGTTATGAGAAAGATGCCCTGTGAAATACATTGCTAGGGAACTTTAAATATGCCACAATCCCTGCGGCGCTGACCAG CGCCGCCCCCGTTCTATATC
Downstream 100 bases:
>100_bases CCTGCTTCAAGGAGTTTTTGTCCGGTCATGCCCTCCTTATGTAATTTGTGTCTTCCGGCATTTTCCCAAAAGGAAACCTG CCGGAGGGAATGGGAGGAGC
Product: Polyprenyl synthetase
Products: NA
Alternate protein names: All-trans-octaprenyl-diphosphate synthase; Octaprenyl pyrophosphate synthase; OPP synthase [H]
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MSIPFFSKLRSQKHYLQLVKPELKQVSEFVEAQSSCFDPEVADYMETVCQSKGKMLRPALVLLVAGATGGIKPAHIRLGA LLEMVHLASLVHDDVIDEADKRRDEATANALWGNSLAVLLGDVLFSHAMVLGTEFGSTEFCRRLANTVRNVCQGEVAQSS RLYDLSMTREEYFEIIRKKTASLFSAATGGAGWISGVTPEVEESLYQLGDLLGVAYQIYDDCLDMVGDEDDAGKTLHTDA TKGKLTLPIFNLLECGDRNVEATLRDAIENREVVDYSAFQDNPVFAEALDKAIQVALEKNEAAREILWLLPQTEYREALA EMTFYMDELLNDCRIS
Sequences:
>Translated_336_residues MSIPFFSKLRSQKHYLQLVKPELKQVSEFVEAQSSCFDPEVADYMETVCQSKGKMLRPALVLLVAGATGGIKPAHIRLGA LLEMVHLASLVHDDVIDEADKRRDEATANALWGNSLAVLLGDVLFSHAMVLGTEFGSTEFCRRLANTVRNVCQGEVAQSS RLYDLSMTREEYFEIIRKKTASLFSAATGGAGWISGVTPEVEESLYQLGDLLGVAYQIYDDCLDMVGDEDDAGKTLHTDA TKGKLTLPIFNLLECGDRNVEATLRDAIENREVVDYSAFQDNPVFAEALDKAIQVALEKNEAAREILWLLPQTEYREALA EMTFYMDELLNDCRIS >Mature_335_residues SIPFFSKLRSQKHYLQLVKPELKQVSEFVEAQSSCFDPEVADYMETVCQSKGKMLRPALVLLVAGATGGIKPAHIRLGAL LEMVHLASLVHDDVIDEADKRRDEATANALWGNSLAVLLGDVLFSHAMVLGTEFGSTEFCRRLANTVRNVCQGEVAQSSR LYDLSMTREEYFEIIRKKTASLFSAATGGAGWISGVTPEVEESLYQLGDLLGVAYQIYDDCLDMVGDEDDAGKTLHTDAT KGKLTLPIFNLLECGDRNVEATLRDAIENREVVDYSAFQDNPVFAEALDKAIQVALEKNEAAREILWLLPQTEYREALAE MTFYMDELLNDCRIS
Specific function: Supplies octaprenyl diphosphate, the precursor for the side chain of the isoprenoid quinones ubiquinone and menaquinone [H]
COG id: COG0142
COG function: function code H; Geranylgeranyl pyrophosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FPP/GGPP synthase family [H]
Homologues:
Organism=Homo sapiens, GI50659086, Length=293, Percent_Identity=30.0341296928328, Blast_Score=116, Evalue=3e-26, Organism=Escherichia coli, GI1789578, Length=280, Percent_Identity=36.7857142857143, Blast_Score=172, Evalue=2e-44, Organism=Caenorhabditis elegans, GI17505681, Length=232, Percent_Identity=33.1896551724138, Blast_Score=120, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6319475, Length=225, Percent_Identity=30.6666666666667, Blast_Score=102, Evalue=7e-23, Organism=Saccharomyces cerevisiae, GI6325188, Length=219, Percent_Identity=25.5707762557078, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24651612, Length=231, Percent_Identity=30.3030303030303, Blast_Score=103, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000092 - InterPro: IPR017446 - InterPro: IPR008949 [H]
Pfam domain/function: PF00348 polyprenyl_synt [H]
EC number: =2.5.1.90 [H]
Molecular weight: Translated: 37334; Mature: 37203
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPFFSKLRSQKHYLQLVKPELKQVSEFVEAQSSCFDPEVADYMETVCQSKGKMLRPAL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH VLLVAGATGGIKPAHIRLGALLEMVHLASLVHDDVIDEADKRRDEATANALWGNSLAVLL HHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GDVLFSHAMVLGTEFGSTEFCRRLANTVRNVCQGEVAQSSRLYDLSMTREEYFEIIRKKT HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH ASLFSAATGGAGWISGVTPEVEESLYQLGDLLGVAYQIYDDCLDMVGDEDDAGKTLHTDA HHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC TKGKLTLPIFNLLECGDRNVEATLRDAIENREVVDYSAFQDNPVFAEALDKAIQVALEKN CCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH EAAREILWLLPQTEYREALAEMTFYMDELLNDCRIS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SIPFFSKLRSQKHYLQLVKPELKQVSEFVEAQSSCFDPEVADYMETVCQSKGKMLRPAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH VLLVAGATGGIKPAHIRLGALLEMVHLASLVHDDVIDEADKRRDEATANALWGNSLAVLL HHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GDVLFSHAMVLGTEFGSTEFCRRLANTVRNVCQGEVAQSSRLYDLSMTREEYFEIIRKKT HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH ASLFSAATGGAGWISGVTPEVEESLYQLGDLLGVAYQIYDDCLDMVGDEDDAGKTLHTDA HHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC TKGKLTLPIFNLLECGDRNVEATLRDAIENREVVDYSAFQDNPVFAEALDKAIQVALEKN CCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH EAAREILWLLPQTEYREALAEMTFYMDELLNDCRIS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8312607; 9278503; 2670911; 8037730 [H]