Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is ndk [H]

Identifier: 187736069

GI number: 187736069

Start: 1901201

End: 1901656

Strand: Direct

Name: ndk [H]

Synonym: Amuc_1580

Alternate gene names: 187736069

Gene position: 1901201-1901656 (Clockwise)

Preceding gene: 187736068

Following gene: 187736086

Centisome position: 71.36

GC content: 53.29

Gene sequence:

>456_bases
ATGCCAAACACTCAAGAAGAAACAACGCTGATTTTGCTGAAGCCCGACTGTGTGCGGAAAAACCTTTCCGGCACCATTTT
GAAACGTTTTTTGTCCGAAGGGTTTCGCCTGCGCGGCATAAAGATGATCCAGCTTGACGAACCGGTGCTCCGGGAACATT
ACGCCCATATTCTGGATCTGGTCATCAATGGGGAACCGCTTTTCCCGAAGCTGCTTGATTTCATGACCAGTTCTCCCGTC
ATCGCCATTGCCCTGAAAGGGCCCGGCGTTATTGTGCGCGTGCGCGAACTGCTGGGGCCCACCAATTCCCAGAAGGCGCA
GAAGGGCACTATCCGCGGCGATTTCGGAACAGACAGCATGATGAACATCTGTCATGCGTCCGACAGCCGTGAATCCGCCG
CCGTGGAGCTGGCAAGATTTTTCCGGGAAGAAGAACTGTTTGACGGCCTTAATTAA

Upstream 100 bases:

>100_bases
ATTCCTTTCCCAACAGAAAAGACCAGTTGTGCAATTATCCTTGACCTGACGGGGATTAGGGTGTAATTCCCTCACTCCAT
CCTGAAACTTCGCTGATTTT

Downstream 100 bases:

>100_bases
GGGAAGGCCGCCTTTTTCCATCAGGTTTCATTGAGGGCCGCAGCTGTAATAACGGCTGCGGCCCTTGCCGTATCGGGGCT
GTGCCTTCCTTGGGAGGATG

Product: Nucleoside-diphosphate kinase

Products: NA

Alternate protein names: NDK; NDP kinase; Nucleoside-2-P kinase [H]

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MPNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDLVINGEPLFPKLLDFMTSSPV
IAIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSMMNICHASDSRESAAVELARFFREEELFDGLN

Sequences:

>Translated_151_residues
MPNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDLVINGEPLFPKLLDFMTSSPV
IAIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSMMNICHASDSRESAAVELARFFREEELFDGLN
>Mature_150_residues
PNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDLVINGEPLFPKLLDFMTSSPVI
AIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSMMNICHASDSRESAAVELARFFREEELFDGLN

Specific function: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate [H]

COG id: COG0105

COG function: function code F; Nucleoside diphosphate kinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NDK family [H]

Homologues:

Organism=Homo sapiens, GI4557797, Length=142, Percent_Identity=44.3661971830986, Blast_Score=119, Evalue=1e-27,
Organism=Homo sapiens, GI38045913, Length=142, Percent_Identity=44.3661971830986, Blast_Score=118, Evalue=2e-27,
Organism=Homo sapiens, GI4826862, Length=145, Percent_Identity=40.6896551724138, Blast_Score=117, Evalue=5e-27,
Organism=Homo sapiens, GI37693993, Length=142, Percent_Identity=41.5492957746479, Blast_Score=115, Evalue=1e-26,
Organism=Homo sapiens, GI66392227, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=2e-26,
Organism=Homo sapiens, GI66392205, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=2e-26,
Organism=Homo sapiens, GI4505409, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=2e-26,
Organism=Homo sapiens, GI66392192, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=2e-26,
Organism=Homo sapiens, GI66392203, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=3e-26,
Organism=Homo sapiens, GI7019465, Length=142, Percent_Identity=35.2112676056338, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI37574614, Length=142, Percent_Identity=35.2112676056338, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI1788866, Length=140, Percent_Identity=41.4285714285714, Blast_Score=108, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17506807, Length=148, Percent_Identity=39.8648648648649, Blast_Score=116, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6322783, Length=147, Percent_Identity=42.8571428571429, Blast_Score=129, Evalue=2e-31,
Organism=Drosophila melanogaster, GI45549037, Length=143, Percent_Identity=39.1608391608392, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001564
- InterPro:   IPR023005 [H]

Pfam domain/function: PF00334 NDK [H]

EC number: =2.7.4.6 [H]

Molecular weight: Translated: 16910; Mature: 16779

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDL
CCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCEECCEEEEECCCHHHHHHHHHHHHH
VINGEPLFPKLLDFMTSSPVIAIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSM
HCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEHHHHCCCCCCCHHCCCCCCCCCCHHH
MNICHASDSRESAAVELARFFREEELFDGLN
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDL
CCCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCEECCEEEEECCCHHHHHHHHHHHHH
VINGEPLFPKLLDFMTSSPVIAIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSM
HCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEHHHHCCCCCCCHHCCCCCCCCCCHHH
MNICHASDSRESAAVELARFFREEELFDGLN
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA