Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is mviN [H]
Identifier: 187736079
GI number: 187736079
Start: 1912538
End: 1914103
Strand: Reverse
Name: mviN [H]
Synonym: Amuc_1590
Alternate gene names: 187736079
Gene position: 1914103-1912538 (Counterclockwise)
Preceding gene: 187736080
Following gene: 187736078
Centisome position: 71.85
GC content: 59.83
Gene sequence:
>1566_bases ATGTCCCTGATGCGGAACAGCCTGGTTGCCTCCGGCGCCATCTTCGCCTGCCGCCTGACAGGCATGGCCAGGGAAATTGT GTACACCTCCCTGTTCGGGGCCACGGGAGCCCTGGACGCCTTTTACACGGCTTTCCGTATTCCCAACCTGTTAAGAGATC TGTTTGCGGAAGGGGCTCTTTCCCAATCCTATACCAGCGTAGCCTCCAAAACGCGGGAGGCGCAGGGAGACGCGGCCGCG TGGGAACTGACCAACAAGGTAGCTACCCAGCTTTCCGCCCTGATGATCGCCATTGTAACGCTGGGGATTCTATTTGCAGG GCCCGTCATGGAAGCCCTCTACAGCGGGGATCACTCTCTGGCGGAGCAATTGTTCGCCACAGACCTGAGCCGCATCATGT GGCCTTTCATCGGATTCGCCTCCCTGTCCGCCCTCATCATGGGGGCGCTGAACATGGTGGGGGTTTTCGGATTGCCCATG CTGGCCTCCGCCGCTTTCAACGTTACTTCCATCCTGCTCGGCCTTCTGATTGGATATTTCATTGATCCATCCTTCGGCCC CAAAGCTTTGTACGGTTTTGCCTGCGGCGTCACCATCGGGGGCATGGCCCAGATTGCCGTGCAGCTCCCCAAACTCAGCA AAACCGGCTTCTGCTGGAAACCCAATTTCCAATGGAACGATCCCCGCGTGCGCAAAATCTGGGGGCTGATGCTTCCCTCC GTGCTGGCTTCAGGCGTGACGCAGTTCACCATCTTCATCAATACGGGGTTCGCTCTGGATCTCCAAAAAGGCTCCGTCAC CGCCCTGACCACGGCGTTCCGCCTCTGGCAGCTTCCCGTGGGGCTCTTCGGAGTTGCGACGGGCATGGTGGTGCTGCCCG CTGTTTCCCGCATGATGGTGGGAGACGGCAGAAAAGAGGTGGCTGTCCACATCGCCAAGGGGTTGCGGCTGGTGGCATTC TTTGCGGTACCCGCTTTTCTCATCCTCTCCATCCTGGGAACGGAATTCGTCTCCTCCGTATACCAGTGGGGCCGCTTCAA CCAGGAGGCCGTGCGTTACACGGGGGAAGTGCTGGGAGCCTATTCCCTGGGCCTGCTGGGCTATGCCGGGACCAAGGTGG TACAGCCCGTCTTCCTGGCTCTTGAAAAACGCTGGGTTCCCCTGATTGCCGCCGCTGTGGCTCTGGCTATCAGCATCGGC CTCAACTACTGTTTCGTCTACATCCTGCATAAAAACGCGGCGTGGCTGGCGCTGACCACCTCCGTGGTCACTACCTTCAA TTTTCTCTTTTACTTCTTTTACCTGCGACGCCAGCTGGGCGGCGTAGACGGACGGACGCTGCTTTCCGGACTGGCCAGGA TCATGGCGGCGGGAATATTTCTGGGGGCCGTGTGCTGGGCAGGCAAGGCATGGTTCCTCCAGGGCTTCCTGAACTGGACC TTCCCGGCCAGGGTGCTGGGGATATCCCTGGTCTGCGGTTGCGCCGGCATCGTTTACCTGGCGGCGGCTTTCCTGCTGAA GACGCCGGAGCTGGAAGCGGTGCGCGCCAAATTCCTGAAACGCTGA
Upstream 100 bases:
>100_bases CCTGCCGGGATGATCGCGACCAGGCTGTCAAGGACAACCCGGCAATGAAACGGGTGGAGCCGTATTGCCGCCAGCTGTTC AAGTAAATTCCCCCCCTTTC
Downstream 100 bases:
>100_bases CGGGAAAAATCCCTTCCATAGAGGGAGGAACGCCCTCCGCAAGAAAAAGAATGGCCGCCGCAAGCATTCTCCTTGCCAGG GGTGCGCTCAATGAGTAAAG
Product: integral membrane protein MviN
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 521; Mature: 520
Protein sequence:
>521_residues MSLMRNSLVASGAIFACRLTGMAREIVYTSLFGATGALDAFYTAFRIPNLLRDLFAEGALSQSYTSVASKTREAQGDAAA WELTNKVATQLSALMIAIVTLGILFAGPVMEALYSGDHSLAEQLFATDLSRIMWPFIGFASLSALIMGALNMVGVFGLPM LASAAFNVTSILLGLLIGYFIDPSFGPKALYGFACGVTIGGMAQIAVQLPKLSKTGFCWKPNFQWNDPRVRKIWGLMLPS VLASGVTQFTIFINTGFALDLQKGSVTALTTAFRLWQLPVGLFGVATGMVVLPAVSRMMVGDGRKEVAVHIAKGLRLVAF FAVPAFLILSILGTEFVSSVYQWGRFNQEAVRYTGEVLGAYSLGLLGYAGTKVVQPVFLALEKRWVPLIAAAVALAISIG LNYCFVYILHKNAAWLALTTSVVTTFNFLFYFFYLRRQLGGVDGRTLLSGLARIMAAGIFLGAVCWAGKAWFLQGFLNWT FPARVLGISLVCGCAGIVYLAAAFLLKTPELEAVRAKFLKR
Sequences:
>Translated_521_residues MSLMRNSLVASGAIFACRLTGMAREIVYTSLFGATGALDAFYTAFRIPNLLRDLFAEGALSQSYTSVASKTREAQGDAAA WELTNKVATQLSALMIAIVTLGILFAGPVMEALYSGDHSLAEQLFATDLSRIMWPFIGFASLSALIMGALNMVGVFGLPM LASAAFNVTSILLGLLIGYFIDPSFGPKALYGFACGVTIGGMAQIAVQLPKLSKTGFCWKPNFQWNDPRVRKIWGLMLPS VLASGVTQFTIFINTGFALDLQKGSVTALTTAFRLWQLPVGLFGVATGMVVLPAVSRMMVGDGRKEVAVHIAKGLRLVAF FAVPAFLILSILGTEFVSSVYQWGRFNQEAVRYTGEVLGAYSLGLLGYAGTKVVQPVFLALEKRWVPLIAAAVALAISIG LNYCFVYILHKNAAWLALTTSVVTTFNFLFYFFYLRRQLGGVDGRTLLSGLARIMAAGIFLGAVCWAGKAWFLQGFLNWT FPARVLGISLVCGCAGIVYLAAAFLLKTPELEAVRAKFLKR >Mature_520_residues SLMRNSLVASGAIFACRLTGMAREIVYTSLFGATGALDAFYTAFRIPNLLRDLFAEGALSQSYTSVASKTREAQGDAAAW ELTNKVATQLSALMIAIVTLGILFAGPVMEALYSGDHSLAEQLFATDLSRIMWPFIGFASLSALIMGALNMVGVFGLPML ASAAFNVTSILLGLLIGYFIDPSFGPKALYGFACGVTIGGMAQIAVQLPKLSKTGFCWKPNFQWNDPRVRKIWGLMLPSV LASGVTQFTIFINTGFALDLQKGSVTALTTAFRLWQLPVGLFGVATGMVVLPAVSRMMVGDGRKEVAVHIAKGLRLVAFF AVPAFLILSILGTEFVSSVYQWGRFNQEAVRYTGEVLGAYSLGLLGYAGTKVVQPVFLALEKRWVPLIAAAVALAISIGL NYCFVYILHKNAAWLALTTSVVTTFNFLFYFFYLRRQLGGVDGRTLLSGLARIMAAGIFLGAVCWAGKAWFLQGFLNWTF PARVLGISLVCGCAGIVYLAAAFLLKTPELEAVRAKFLKR
Specific function: Unknown
COG id: COG0728
COG function: function code R; Uncharacterized membrane protein, putative virulence factor
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mviN family [H]
Homologues:
Organism=Escherichia coli, GI1787309, Length=440, Percent_Identity=32.2727272727273, Blast_Score=202, Evalue=6e-53,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004268 [H]
Pfam domain/function: PF03023 MVIN [H]
EC number: NA
Molecular weight: Translated: 56222; Mature: 56091
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLMRNSLVASGAIFACRLTGMAREIVYTSLFGATGALDAFYTAFRIPNLLRDLFAEGAL CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCH SQSYTSVASKTREAQGDAAAWELTNKVATQLSALMIAIVTLGILFAGPVMEALYSGDHSL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH AEQLFATDLSRIMWPFIGFASLSALIMGALNMVGVFGLPMLASAAFNVTSILLGLLIGYF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDPSFGPKALYGFACGVTIGGMAQIAVQLPKLSKTGFCWKPNFQWNDPRVRKIWGLMLPS CCCCCCHHHHHHHHHHCHHCHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHH VLASGVTQFTIFINTGFALDLQKGSVTALTTAFRLWQLPVGLFGVATGMVVLPAVSRMMV HHHCCHHEEEEEEECCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH GDGRKEVAVHIAKGLRLVAFFAVPAFLILSILGTEFVSSVYQWGRFNQEAVRYTGEVLGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH YSLGLLGYAGTKVVQPVFLALEKRWVPLIAAAVALAISIGLNYCFVYILHKNAAWLALTT HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHH SVVTTFNFLFYFFYLRRQLGGVDGRTLLSGLARIMAAGIFLGAVCWAGKAWFLQGFLNWT HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC FPARVLGISLVCGCAGIVYLAAAFLLKTPELEAVRAKFLKR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure SLMRNSLVASGAIFACRLTGMAREIVYTSLFGATGALDAFYTAFRIPNLLRDLFAEGAL CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCH SQSYTSVASKTREAQGDAAAWELTNKVATQLSALMIAIVTLGILFAGPVMEALYSGDHSL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH AEQLFATDLSRIMWPFIGFASLSALIMGALNMVGVFGLPMLASAAFNVTSILLGLLIGYF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IDPSFGPKALYGFACGVTIGGMAQIAVQLPKLSKTGFCWKPNFQWNDPRVRKIWGLMLPS CCCCCCHHHHHHHHHHCHHCHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHH VLASGVTQFTIFINTGFALDLQKGSVTALTTAFRLWQLPVGLFGVATGMVVLPAVSRMMV HHHCCHHEEEEEEECCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH GDGRKEVAVHIAKGLRLVAFFAVPAFLILSILGTEFVSSVYQWGRFNQEAVRYTGEVLGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH YSLGLLGYAGTKVVQPVFLALEKRWVPLIAAAVALAISIGLNYCFVYILHKNAAWLALTT HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHH SVVTTFNFLFYFFYLRRQLGGVDGRTLLSGLARIMAAGIFLGAVCWAGKAWFLQGFLNWT HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC FPARVLGISLVCGCAGIVYLAAAFLLKTPELEAVRAKFLKR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8200538; 11677609 [H]