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The map label for this gene is ybdL [C]

Identifier: 187736078

GI number: 187736078

Start: 1911202

End: 1912368

Strand: Reverse

Name: ybdL [C]

Synonym: Amuc_1589

Alternate gene names: 187736078

Gene position: 1912368-1911202 (Counterclockwise)

Preceding gene: 187736079

Following gene: 187736077

Centisome position: 71.78

GC content: 57.16

Gene sequence:

>1167_bases
ATGGACATGATTTCCCCCAGCATTGCGGCATTGACCCCTTCCCTGACCCTCAAGGTGACCAACCGGGCCAAGGCTATGAA
AGCCTCCGGTGAAGAAGTTTACGGTTTGGCAGGCGGTGAACCTGAAATGGACACCCCGGAAAACATCAAGCAGGCAGCCA
TCGCGGCCCTGAACAACGGAGCCACCAAATATACGCCTTCCGCCGGTCTTCCCGCACTCCGCCAGGCCATCGCAGAAAAG
CTCAAGAGGGAAAACAACCTGGAATACGATTTCACCCAGATCACCGTGGGAGCCGGCGCCAAGCACGCCTGTTTCAACGC
CATCATGGCAACCGTATCCGAGGGGGATGAAGTCATCATCCCCGCTCCGTACTGGGTCAGCTATCCGGAAATGGTCCGCA
TGTGCGGAGGCATCCCCGTCATCGTGGAAACCACGGCGGAAAACGGATGGAAGCTTACCGCCGAACAATTTGAGGAAGCC
ATGACCCCCCGCACCAAGATGGTCATCCTCACTACCCCGAACAATCCGACCGGGTCCGTTTATTCCGAAGAAGAACTGCG
CGCCCTGGGAGAAGTGGCCCTGAGCGAAGACATCCTCATCCTGGCTGATGAAATTTACGAACACCTCGTATACGGGGACG
CCAGGCACGTCAGCATCGCCTCCCTCAGTCCGGAACTGTACGACCTGACCATCACCATCAACGGCTTCTCCAAGGGCTAC
GCCATGACTGGATGGCGCCTAGGCTATTCCGCAGCTCCGGCAGCCATTGCCAAGGCCATCCAGATGATTCAGGATCACAC
CACTTCCAACGTCTGTACGTTCGCCCAGTATGGAGGTATTGAGGCCCTTACGGGAGACCAGAGCTTCATCAGCGACATGC
GCGACGAATATGACATGCGCCGCCAGTACGTTTACTCCCGCCTCAGCGCCATCCCGAATATCAGTGTTGTGGAGCCGCAG
GGCGCTTTCTACTTCTTTGTGGACACAAGCAGGCTGGGACTCACCTCCCTGAATCTGTGCGACAAGCTTCTGGAACGCTA
CAAGGTCGCGGCCGTCCCCGGCATCGCCTTCGGCAATGACAAGGCCATCCGCATCAGCTACTGCACCACGCTGGACATTC
TGAAAGAAGCTCTGGACCGCTTTGAAGAATTCTGCAAGGCGCATTAA

Upstream 100 bases:

>100_bases
TCCTTGCCAGGGGTGCGCTCAATGAGTAAAGTTTTTCCGCCTATGCGGAGAACAGCCTGTTTTCCGCCAGGGCATCAAAA
TCTACGACTGCACCACAACA

Downstream 100 bases:

>100_bases
AAAACGTTGATCACCATAAAAAGGCGTTCCACGTCAAGCGGAACGCCTTTTTATTCTTCCGGATTTCCCACCTGCAGCAA
ACCTGCGGCAAGGAAATGCG

Product: aminotransferase class I and II

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNGATKYTPSAGLPALRQAIAEK
LKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVIIPAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEA
MTPRTKMVILTTPNNPTGSVYSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY
AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMRRQYVYSRLSAIPNISVVEPQ
GAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGNDKAIRISYCTTLDILKEALDRFEEFCKAH

Sequences:

>Translated_388_residues
MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNGATKYTPSAGLPALRQAIAEK
LKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVIIPAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEA
MTPRTKMVILTTPNNPTGSVYSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY
AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMRRQYVYSRLSAIPNISVVEPQ
GAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGNDKAIRISYCTTLDILKEALDRFEEFCKAH
>Mature_388_residues
MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNGATKYTPSAGLPALRQAIAEK
LKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVIIPAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEA
MTPRTKMVILTTPNNPTGSVYSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY
AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMRRQYVYSRLSAIPNISVVEPQ
GAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGNDKAIRISYCTTLDILKEALDRFEEFCKAH

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=390, Percent_Identity=28.2051282051282, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI56713256, Length=390, Percent_Identity=28.2051282051282, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI95147551, Length=323, Percent_Identity=29.4117647058824, Blast_Score=148, Evalue=7e-36,
Organism=Homo sapiens, GI169881279, Length=323, Percent_Identity=29.4117647058824, Blast_Score=148, Evalue=7e-36,
Organism=Homo sapiens, GI169881281, Length=247, Percent_Identity=28.3400809716599, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI4507369, Length=392, Percent_Identity=24.4897959183673, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI215599424, Length=387, Percent_Identity=23.7726098191214, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI19263340, Length=387, Percent_Identity=23.7726098191214, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4885351, Length=344, Percent_Identity=24.4186046511628, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1786816, Length=378, Percent_Identity=29.6296296296296, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1788627, Length=387, Percent_Identity=31.7829457364341, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1788722, Length=403, Percent_Identity=25.8064516129032, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1787909, Length=298, Percent_Identity=20.8053691275168, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71994476, Length=359, Percent_Identity=28.4122562674095, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI71994472, Length=359, Percent_Identity=28.4122562674095, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17567663, Length=374, Percent_Identity=26.7379679144385, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17567369, Length=261, Percent_Identity=27.5862068965517, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71981209, Length=389, Percent_Identity=22.6221079691517, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322401, Length=398, Percent_Identity=27.6381909547739, Blast_Score=148, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6323118, Length=365, Percent_Identity=24.6575342465753, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6320317, Length=342, Percent_Identity=23.3918128654971, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28573069, Length=257, Percent_Identity=30.7392996108949, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24646114, Length=257, Percent_Identity=30.7392996108949, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI28573067, Length=257, Percent_Identity=30.7392996108949, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI28573065, Length=257, Percent_Identity=30.7392996108949, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI18859735, Length=355, Percent_Identity=24.5070422535211, Blast_Score=108, Evalue=8e-24,
Organism=Drosophila melanogaster, GI45551451, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641770, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641760, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641768, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641766, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641764, Length=392, Percent_Identity=25.765306122449, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42442; Mature: 42442

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNG
CCCCCCCHHHCCCCEEEEECCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC
ATKYTPSAGLPALRQAIAEKLKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVII
CCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEE
PAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEAMTPRTKMVILTTPNNPTGSV
CCCCCCCCHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHCCCCEEEEEEECCCCCCCCC
YSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY
CCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCCCC
AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMR
EECCEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHCCEEEECCCHHHHHHHHHHHHHH
RQYVYSRLSAIPNISVVEPQGAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGND
HHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCC
KAIRISYCTTLDILKEALDRFEEFCKAH
CEEEEEEHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDMISPSIAALTPSLTLKVTNRAKAMKASGEEVYGLAGGEPEMDTPENIKQAAIAALNNG
CCCCCCCHHHCCCCEEEEECCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC
ATKYTPSAGLPALRQAIAEKLKRENNLEYDFTQITVGAGAKHACFNAIMATVSEGDEVII
CCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEE
PAPYWVSYPEMVRMCGGIPVIVETTAENGWKLTAEQFEEAMTPRTKMVILTTPNNPTGSV
CCCCCCCCHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHCCCCEEEEEEECCCCCCCCC
YSEEELRALGEVALSEDILILADEIYEHLVYGDARHVSIASLSPELYDLTITINGFSKGY
CCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCCCC
AMTGWRLGYSAAPAAIAKAIQMIQDHTTSNVCTFAQYGGIEALTGDQSFISDMRDEYDMR
EECCEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHCCEEEECCCHHHHHHHHHHHHHH
RQYVYSRLSAIPNISVVEPQGAFYFFVDTSRLGLTSLNLCDKLLERYKVAAVPGIAFGND
HHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEECCC
KAIRISYCTTLDILKEALDRFEEFCKAH
CEEEEEEHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1990006; 2155199 [H]