Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ndk [H]
Identifier: 187736069
GI number: 187736069
Start: 1901201
End: 1901656
Strand: Direct
Name: ndk [H]
Synonym: Amuc_1580
Alternate gene names: 187736069
Gene position: 1901201-1901656 (Clockwise)
Preceding gene: 187736068
Following gene: 187736086
Centisome position: 71.36
GC content: 53.29
Gene sequence:
>456_bases ATGCCAAACACTCAAGAAGAAACAACGCTGATTTTGCTGAAGCCCGACTGTGTGCGGAAAAACCTTTCCGGCACCATTTT GAAACGTTTTTTGTCCGAAGGGTTTCGCCTGCGCGGCATAAAGATGATCCAGCTTGACGAACCGGTGCTCCGGGAACATT ACGCCCATATTCTGGATCTGGTCATCAATGGGGAACCGCTTTTCCCGAAGCTGCTTGATTTCATGACCAGTTCTCCCGTC ATCGCCATTGCCCTGAAAGGGCCCGGCGTTATTGTGCGCGTGCGCGAACTGCTGGGGCCCACCAATTCCCAGAAGGCGCA GAAGGGCACTATCCGCGGCGATTTCGGAACAGACAGCATGATGAACATCTGTCATGCGTCCGACAGCCGTGAATCCGCCG CCGTGGAGCTGGCAAGATTTTTCCGGGAAGAAGAACTGTTTGACGGCCTTAATTAA
Upstream 100 bases:
>100_bases ATTCCTTTCCCAACAGAAAAGACCAGTTGTGCAATTATCCTTGACCTGACGGGGATTAGGGTGTAATTCCCTCACTCCAT CCTGAAACTTCGCTGATTTT
Downstream 100 bases:
>100_bases GGGAAGGCCGCCTTTTTCCATCAGGTTTCATTGAGGGCCGCAGCTGTAATAACGGCTGCGGCCCTTGCCGTATCGGGGCT GTGCCTTCCTTGGGAGGATG
Product: Nucleoside-diphosphate kinase
Products: NA
Alternate protein names: NDK; NDP kinase; Nucleoside-2-P kinase [H]
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MPNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDLVINGEPLFPKLLDFMTSSPV IAIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSMMNICHASDSRESAAVELARFFREEELFDGLN
Sequences:
>Translated_151_residues MPNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDLVINGEPLFPKLLDFMTSSPV IAIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSMMNICHASDSRESAAVELARFFREEELFDGLN >Mature_150_residues PNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDLVINGEPLFPKLLDFMTSSPVI AIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSMMNICHASDSRESAAVELARFFREEELFDGLN
Specific function: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate [H]
COG id: COG0105
COG function: function code F; Nucleoside diphosphate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NDK family [H]
Homologues:
Organism=Homo sapiens, GI4557797, Length=142, Percent_Identity=44.3661971830986, Blast_Score=119, Evalue=1e-27, Organism=Homo sapiens, GI38045913, Length=142, Percent_Identity=44.3661971830986, Blast_Score=118, Evalue=2e-27, Organism=Homo sapiens, GI4826862, Length=145, Percent_Identity=40.6896551724138, Blast_Score=117, Evalue=5e-27, Organism=Homo sapiens, GI37693993, Length=142, Percent_Identity=41.5492957746479, Blast_Score=115, Evalue=1e-26, Organism=Homo sapiens, GI66392227, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=2e-26, Organism=Homo sapiens, GI66392205, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=2e-26, Organism=Homo sapiens, GI4505409, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=2e-26, Organism=Homo sapiens, GI66392192, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=2e-26, Organism=Homo sapiens, GI66392203, Length=142, Percent_Identity=42.2535211267606, Blast_Score=114, Evalue=3e-26, Organism=Homo sapiens, GI7019465, Length=142, Percent_Identity=35.2112676056338, Blast_Score=76, Evalue=1e-14, Organism=Homo sapiens, GI37574614, Length=142, Percent_Identity=35.2112676056338, Blast_Score=76, Evalue=1e-14, Organism=Escherichia coli, GI1788866, Length=140, Percent_Identity=41.4285714285714, Blast_Score=108, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17506807, Length=148, Percent_Identity=39.8648648648649, Blast_Score=116, Evalue=5e-27, Organism=Saccharomyces cerevisiae, GI6322783, Length=147, Percent_Identity=42.8571428571429, Blast_Score=129, Evalue=2e-31, Organism=Drosophila melanogaster, GI45549037, Length=143, Percent_Identity=39.1608391608392, Blast_Score=111, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001564 - InterPro: IPR023005 [H]
Pfam domain/function: PF00334 NDK [H]
EC number: =2.7.4.6 [H]
Molecular weight: Translated: 16910; Mature: 16779
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDL CCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCEECCEEEEECCCHHHHHHHHHHHHH VINGEPLFPKLLDFMTSSPVIAIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSM HCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEHHHHCCCCCCCHHCCCCCCCCCCHHH MNICHASDSRESAAVELARFFREEELFDGLN HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PNTQEETTLILLKPDCVRKNLSGTILKRFLSEGFRLRGIKMIQLDEPVLREHYAHILDL CCCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCEECCEEEEECCCHHHHHHHHHHHHH VINGEPLFPKLLDFMTSSPVIAIALKGPGVIVRVRELLGPTNSQKAQKGTIRGDFGTDSM HCCCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEHHHHCCCCCCCHHCCCCCCCCCCHHH MNICHASDSRESAAVELARFFREEELFDGLN HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA