Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736064
Identifier: 187736064
GI number: 187736064
Start: 1898030
End: 1898593
Strand: Direct
Name: 187736064
Synonym: Amuc_1575
Alternate gene names: NA
Gene position: 1898030-1898593 (Clockwise)
Preceding gene: 187736062
Following gene: 187736068
Centisome position: 71.24
GC content: 53.19
Gene sequence:
>564_bases ATGAGAGACATCGTATATTTTGATTTGGAAACCCGTCATTCCGCGGCGGAGGTGGGCGGCTGGCATAATACGGCCGAGAT GCGCCTTTCCGTGGGCGTGACTTATTCCACGGCTTCCGGCAAATATACGATTTATTCTGAGGAAATGGTGGATGATCTCA TCCGGCAGCTTTCCCAGGCCGACCTGGTGGTGGGTTACAACCACGAGCATTTCGACTATGGCGTGCTCCAGCGTTATACG ATGTGGAACATGATTGATATCACGAACAACCTTGATTTGTGCAAGGACATCGAACAGCGCGGGGGAGTGCGCGTCAAGCT GGATTCCGTGGCGGCCGCCTCCATCGGTTCTTCAAAAACGGCCGTGGGCACCCAGGCTCTCAAATGGTGGGCGGAATACG CGCAGACGGGTAATACGGAGCTTTTAATGGATATAGCCCGTTATTGCTGTTTTGACGTGAAGGTGACGCGGGATGTGCAC TGGTACGGGGCGGAACACGGTTTCATCCGTTATGATGATAAAAAGGGCGGCCAGGTGGAATTGCCCGTGGATTGGAAATT GTAA
Upstream 100 bases:
>100_bases ATGTGGAAACGGGGCTGCATGCGCTTATTCTCATCACAAACAGGCCTCCCGTTCAAGTGGGACTTGTCCAAAAGTGGCAA ATAATGTACGTTTTCACCCG
Downstream 100 bases:
>100_bases CTTTTCCTGCATGCATGTCCGGCCGGCTGTAGCCGGTTTTTTTCCGGGCGCTGAAGTGGGTCTGGTTTCCCGCCTTTGGC GGCGTTGCCGTTTATCCCCG
Product: DEAD/DEAH box helicase domain protein
Products: NA
Alternate protein names: DEAD/DEAH Box Helicase Domain-Containing Protein; DEAD-Box ATP Dependent DNA Helicase; DEAD/DEAH Box Helicase-Like; Helicase; Helicase Family Protein; ATP-Dependent DEAD/DEAH Box Helicase Family Protein; ATP-Dependent RNA Helicase DEAD/DEAH Box Family
Number of amino acids: Translated: 187; Mature: 187
Protein sequence:
>187_residues MRDIVYFDLETRHSAAEVGGWHNTAEMRLSVGVTYSTASGKYTIYSEEMVDDLIRQLSQADLVVGYNHEHFDYGVLQRYT MWNMIDITNNLDLCKDIEQRGGVRVKLDSVAAASIGSSKTAVGTQALKWWAEYAQTGNTELLMDIARYCCFDVKVTRDVH WYGAEHGFIRYDDKKGGQVELPVDWKL
Sequences:
>Translated_187_residues MRDIVYFDLETRHSAAEVGGWHNTAEMRLSVGVTYSTASGKYTIYSEEMVDDLIRQLSQADLVVGYNHEHFDYGVLQRYT MWNMIDITNNLDLCKDIEQRGGVRVKLDSVAAASIGSSKTAVGTQALKWWAEYAQTGNTELLMDIARYCCFDVKVTRDVH WYGAEHGFIRYDDKKGGQVELPVDWKL >Mature_187_residues MRDIVYFDLETRHSAAEVGGWHNTAEMRLSVGVTYSTASGKYTIYSEEMVDDLIRQLSQADLVVGYNHEHFDYGVLQRYT MWNMIDITNNLDLCKDIEQRGGVRVKLDSVAAASIGSSKTAVGTQALKWWAEYAQTGNTELLMDIARYCCFDVKVTRDVH WYGAEHGFIRYDDKKGGQVELPVDWKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21317; Mature: 21317
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDIVYFDLETRHSAAEVGGWHNTAEMRLSVGVTYSTASGKYTIYSEEMVDDLIRQLSQA CCCEEEEEECCCCCHHHCCCCCCCEEEEEEEEEEEECCCCEEEEEHHHHHHHHHHHHCCC DLVVGYNHEHFDYGVLQRYTMWNMIDITNNLDLCKDIEQRGGVRVKLDSVAAASIGSSKT CEEEECCCCCCCHHHHHHHHHHEEEEECCCCHHHHHHHHCCCEEEEECCEEEECCCCCCC AVGTQALKWWAEYAQTGNTELLMDIARYCCFDVKVTRDVHWYGAEHGFIRYDDKKGGQVE HHHHHHHHHHHHHHHCCCHHHHHHHHHHHEECEEEECEEEEECCCCCEEEEECCCCCEEE LPVDWKL EEEECCC >Mature Secondary Structure MRDIVYFDLETRHSAAEVGGWHNTAEMRLSVGVTYSTASGKYTIYSEEMVDDLIRQLSQA CCCEEEEEECCCCCHHHCCCCCCCEEEEEEEEEEEECCCCEEEEEHHHHHHHHHHHHCCC DLVVGYNHEHFDYGVLQRYTMWNMIDITNNLDLCKDIEQRGGVRVKLDSVAAASIGSSKT CEEEECCCCCCCHHHHHHHHHHEEEEECCCCHHHHHHHHCCCEEEEECCEEEECCCCCCC AVGTQALKWWAEYAQTGNTELLMDIARYCCFDVKVTRDVHWYGAEHGFIRYDDKKGGQVE HHHHHHHHHHHHHHHCCCHHHHHHHHHHHEECEEEECEEEEECCCCCEEEEECCCCCEEE LPVDWKL EEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA