Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736050
Identifier: 187736050
GI number: 187736050
Start: 1874068
End: 1874856
Strand: Direct
Name: 187736050
Synonym: Amuc_1560
Alternate gene names: NA
Gene position: 1874068-1874856 (Clockwise)
Preceding gene: 187736049
Following gene: 187736057
Centisome position: 70.35
GC content: 55.39
Gene sequence:
>789_bases ATGAAGAAATCCTTGTTGTCTTTAGCTTTAATCTCAAGTACCTTGCTTGCCGTAGAGGCGGCAACGGTGCAAATTGATTT CGGACGCAGTGACGCCACGACGGACGGCGTGCTCAATATGAATTATGATAGTGCCTCCGCCGCTTTGGGCAGCATGCCGG GAAGCGTTTCTTTGGCATGGAGTACGGCAGAATGGCCTGTAGGGGATAATGGCCATACCACCACCAAGACAGTTGAGGAA GAAGCCGATTGGAAAAATCCTTTCAACGGCAGCATGCCTTTCAGCTTGGGGGACACTTTTCGTGACGGTCTTTTAACGCA GACGGCCGACGGGTCCGGCTCTTTCACTGTAACGTTCAGCGGTCTTGCCGCCGGGGAGTATTCCTTGTCCATCTTTGGAG GTTTCACAGGCAAGGATGCATTTGCCGGTCAAACCTGGACGATCGGAAACGCCGATGCTTCCAATGCCGTCTGGACAAGC TTCGGCACAGACGCCAGCGGGAACTGGGCCGAAATTTCTTCCGTGACGGGCGATAATTCCGGAGTCCTTACTCCGGCGAA CGCTTCCACTTCCAGCGCTACTGCTAATAAAGGGCTTTATGCTACGGTAGAGAATGTCGTGGTAGGGGAAGACGGGACGC TTACCCTTACGATTCAGGGGGATGGGAGCAAGGGGTACGGCCTTACAGCCCTTAATTACCTTTCCCTGACGCAGGTGCCG GAACCCGCTACGGCAGCATTGAGCCTGCTGGGCGCTGCTGCCCTGTTCCTGCGCCGCCGCAGGGACTGA
Upstream 100 bases:
>100_bases GGAAGATGATTTATCCCAAAAAAATAAACGTAATACATGATTAAATTTTCATGATTTGCCATTGACACCGGATTGTTAAT TCGGTTTACTTCGTTTTGCC
Downstream 100 bases:
>100_bases CCGGAAAGAACAGACCTTTGTTATCAACGCCGCTCCGTAATTCACGCGGAGCGGTTTTTTTATTTGGCGTTTTTCCTTTC CCTGTCTATACAGCAGGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MKKSLLSLALISSTLLAVEAATVQIDFGRSDATTDGVLNMNYDSASAALGSMPGSVSLAWSTAEWPVGDNGHTTTKTVEE EADWKNPFNGSMPFSLGDTFRDGLLTQTADGSGSFTVTFSGLAAGEYSLSIFGGFTGKDAFAGQTWTIGNADASNAVWTS FGTDASGNWAEISSVTGDNSGVLTPANASTSSATANKGLYATVENVVVGEDGTLTLTIQGDGSKGYGLTALNYLSLTQVP EPATAALSLLGAAALFLRRRRD
Sequences:
>Translated_262_residues MKKSLLSLALISSTLLAVEAATVQIDFGRSDATTDGVLNMNYDSASAALGSMPGSVSLAWSTAEWPVGDNGHTTTKTVEE EADWKNPFNGSMPFSLGDTFRDGLLTQTADGSGSFTVTFSGLAAGEYSLSIFGGFTGKDAFAGQTWTIGNADASNAVWTS FGTDASGNWAEISSVTGDNSGVLTPANASTSSATANKGLYATVENVVVGEDGTLTLTIQGDGSKGYGLTALNYLSLTQVP EPATAALSLLGAAALFLRRRRD >Mature_262_residues MKKSLLSLALISSTLLAVEAATVQIDFGRSDATTDGVLNMNYDSASAALGSMPGSVSLAWSTAEWPVGDNGHTTTKTVEE EADWKNPFNGSMPFSLGDTFRDGLLTQTADGSGSFTVTFSGLAAGEYSLSIFGGFTGKDAFAGQTWTIGNADASNAVWTS FGTDASGNWAEISSVTGDNSGVLTPANASTSSATANKGLYATVENVVVGEDGTLTLTIQGDGSKGYGLTALNYLSLTQVP EPATAALSLLGAAALFLRRRRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26927; Mature: 26927
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSLLSLALISSTLLAVEAATVQIDFGRSDATTDGVLNMNYDSASAALGSMPGSVSLAW CCHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHCCCCCEEEEE STAEWPVGDNGHTTTKTVEEEADWKNPFNGSMPFSLGDTFRDGLLTQTADGSGSFTVTFS ECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCEEEEEEE GLAAGEYSLSIFGGFTGKDAFAGQTWTIGNADASNAVWTSFGTDASGNWAEISSVTGDNS CEECCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCC GVLTPANASTSSATANKGLYATVENVVVGEDGTLTLTIQGDGSKGYGLTALNYLSLTQVP CEEECCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEECCCC EPATAALSLLGAAALFLRRRRD CHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKSLLSLALISSTLLAVEAATVQIDFGRSDATTDGVLNMNYDSASAALGSMPGSVSLAW CCHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHCCCCCEEEEE STAEWPVGDNGHTTTKTVEEEADWKNPFNGSMPFSLGDTFRDGLLTQTADGSGSFTVTFS ECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCEEEEEEE GLAAGEYSLSIFGGFTGKDAFAGQTWTIGNADASNAVWTSFGTDASGNWAEISSVTGDNS CEECCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCC GVLTPANASTSSATANKGLYATVENVVVGEDGTLTLTIQGDGSKGYGLTALNYLSLTQVP CEEECCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEECCCC EPATAALSLLGAAALFLRRRRD CHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA