Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is rsbU [H]
Identifier: 187736006
GI number: 187736006
Start: 1810066
End: 1811703
Strand: Reverse
Name: rsbU [H]
Synonym: Amuc_1516
Alternate gene names: 187736006
Gene position: 1811703-1810066 (Counterclockwise)
Preceding gene: 187736007
Following gene: 187736000
Centisome position: 68.0
GC content: 56.17
Gene sequence:
>1638_bases ATGCCGCCCTCACGCAACAGACATTCCGCCCAGAGAGTTTTTACCTGGGACAAAATCAAAATGGCCCTGGCGGCGGCGGA AGAAGGATTTTATATCTGGAATATTAAAACGGGCGTCATTCATTACACGGACCGCTGCCTGACCATGATGGGGGCCAGCC GCAAGGAGAAAGCCCCCAATATCTTCACCCAGCCGGAGCTTACCATACACGAGGAAGACCAGGCTTTTTTTTCCCAGGAA GTGCGCCGTTATCTGGACGGCCACTCCCATGTGCCCATGCGCATTGAAATCCGGATGAAGAAGCTGAACTCCAAAAGCTG GAGCTGGGTCCGCGTCAACGGACTCGCCCGCAGGGACAAGCAGCGCCGGCCCGTTATGCTGGTGGGCGTATGGGTCAATA TTACCCGGCGGAAAACAGCGGAACTGCGTGCTGCGGAGGACAGGGACCTGTTTCATACCCTGATTGAACACATTCCCGAC AGTATCTATTTCAAGAACCGGGAATCACGTTTCGTCCTGGCGAATACCGCCACAGCCAATAAGCTGGGCGTACCGACGCC GGCAGACCTGACCGGACGCACGGACGATTACTTTTTTGACCAAACGATGTCCGATATTTCCCGCAAGGAGGAAATGGACA TCATGGTTACCGGACGCCCCATCCGCGCCCGCCTTCATCATGAGACATGGCTCCACAAGGATGATTCCTGGAGCCAGATC AGCAAGTTCCCGTGGTACGGACGCAACGGAGAGCTAAAGGGAATTGTAGGTATTTCCAGTGATGTCACCAAACTGGTGAA GACTGAAATCAAGGCCACGGAAACGGCCCGCATCCTGGAGGAACGCAACAGAACTCTGGAAAAGGAAATAGATTTGGCCA GGGAAATCCAGTTCGCCCTGCTTCCCTACGAAATTCCCTCCCGCTCCCATACGGAACACGGCCTGACCCGCCATGCGGAT TTTCACCATATTTTCACTCCTTCGGAGGGGGTTGCAGGAGACTGGTTCGATGCTTTTCCCGTAGGCAGTTCCGGCGTCGG CGCCATTGTCTGCGACGTGATGGGCCACGGCATCCGCGCCGCCCTGATCGCCTCCATGCTCCGCGGCCTGATGGAACAGT TGTCCCACCTGGCGGATAACCCGGCGGCTTTCCTTACTTCCCTCAACCACCAGCTCGCCAAAATCCTGCAACGGGCGAAC ACCACCATGTTTGCCTCTGCCGTTTATATTTACCTGGATCTGGAAACCGGGGTCATGACGGCTTCTACAGCCGGGCATCC GCATCCCATCATTATGGGACCGGACGGAGTCGCCCGCAAAATGCCGCTGCCCAAAGGAATCGCCCTGGGGCTGCTGGATG ACGCTACGTACCATAATGCCCAGTTTTCGCTCCTGGCGGGGTCCCGCATCCTGATGTACACGGACGGCCTGACGGAAGCA GCCAACCAGGACGGGGAAGAAATGGGCGTGGAAAGGCTGATTGACTATTTCAATAATTCCTCCCCCCACAGCACCAAGGA TTTTGTCCATCAGGCCCTTACCTGCGTAGCCAAATTTACCGGCTGCACCAATCAGGCCGACGATATCTGCATGCTGGGCA TCAGCTATTCCGAACACGAGGCAGAAACGGACGGCTAA
Upstream 100 bases:
>100_bases TCATACGCGTTCCCCCGGCCAGGCCTCCTTTCAGAAAGGATTCCTTTATTTTGCCTCTTGCCAAGACAGCGGTTTTATCG TTAGATTAAGGGCAACTGCA
Downstream 100 bases:
>100_bases CAGCCGGTTCCTGCTCCTGACGTTTCCCAAACCTGCTTCCTCTTCCCTGGCCGGCTGCATCCCGGAATTATCCGCGGGGG GGAAACCCTACATGCACCCC
Product: PAS/PAC sensor protein
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 545; Mature: 544
Protein sequence:
>545_residues MPPSRNRHSAQRVFTWDKIKMALAAAEEGFYIWNIKTGVIHYTDRCLTMMGASRKEKAPNIFTQPELTIHEEDQAFFSQE VRRYLDGHSHVPMRIEIRMKKLNSKSWSWVRVNGLARRDKQRRPVMLVGVWVNITRRKTAELRAAEDRDLFHTLIEHIPD SIYFKNRESRFVLANTATANKLGVPTPADLTGRTDDYFFDQTMSDISRKEEMDIMVTGRPIRARLHHETWLHKDDSWSQI SKFPWYGRNGELKGIVGISSDVTKLVKTEIKATETARILEERNRTLEKEIDLAREIQFALLPYEIPSRSHTEHGLTRHAD FHHIFTPSEGVAGDWFDAFPVGSSGVGAIVCDVMGHGIRAALIASMLRGLMEQLSHLADNPAAFLTSLNHQLAKILQRAN TTMFASAVYIYLDLETGVMTASTAGHPHPIIMGPDGVARKMPLPKGIALGLLDDATYHNAQFSLLAGSRILMYTDGLTEA ANQDGEEMGVERLIDYFNNSSPHSTKDFVHQALTCVAKFTGCTNQADDICMLGISYSEHEAETDG
Sequences:
>Translated_545_residues MPPSRNRHSAQRVFTWDKIKMALAAAEEGFYIWNIKTGVIHYTDRCLTMMGASRKEKAPNIFTQPELTIHEEDQAFFSQE VRRYLDGHSHVPMRIEIRMKKLNSKSWSWVRVNGLARRDKQRRPVMLVGVWVNITRRKTAELRAAEDRDLFHTLIEHIPD SIYFKNRESRFVLANTATANKLGVPTPADLTGRTDDYFFDQTMSDISRKEEMDIMVTGRPIRARLHHETWLHKDDSWSQI SKFPWYGRNGELKGIVGISSDVTKLVKTEIKATETARILEERNRTLEKEIDLAREIQFALLPYEIPSRSHTEHGLTRHAD FHHIFTPSEGVAGDWFDAFPVGSSGVGAIVCDVMGHGIRAALIASMLRGLMEQLSHLADNPAAFLTSLNHQLAKILQRAN TTMFASAVYIYLDLETGVMTASTAGHPHPIIMGPDGVARKMPLPKGIALGLLDDATYHNAQFSLLAGSRILMYTDGLTEA ANQDGEEMGVERLIDYFNNSSPHSTKDFVHQALTCVAKFTGCTNQADDICMLGISYSEHEAETDG >Mature_544_residues PPSRNRHSAQRVFTWDKIKMALAAAEEGFYIWNIKTGVIHYTDRCLTMMGASRKEKAPNIFTQPELTIHEEDQAFFSQEV RRYLDGHSHVPMRIEIRMKKLNSKSWSWVRVNGLARRDKQRRPVMLVGVWVNITRRKTAELRAAEDRDLFHTLIEHIPDS IYFKNRESRFVLANTATANKLGVPTPADLTGRTDDYFFDQTMSDISRKEEMDIMVTGRPIRARLHHETWLHKDDSWSQIS KFPWYGRNGELKGIVGISSDVTKLVKTEIKATETARILEERNRTLEKEIDLAREIQFALLPYEIPSRSHTEHGLTRHADF HHIFTPSEGVAGDWFDAFPVGSSGVGAIVCDVMGHGIRAALIASMLRGLMEQLSHLADNPAAFLTSLNHQLAKILQRANT TMFASAVYIYLDLETGVMTASTAGHPHPIIMGPDGVARKMPLPKGIALGLLDDATYHNAQFSLLAGSRILMYTDGLTEAA NQDGEEMGVERLIDYFNNSSPHSTKDFVHQALTCVAKFTGCTNQADDICMLGISYSEHEAETDG
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 61438; Mature: 61306
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS50113 PAC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPSRNRHSAQRVFTWDKIKMALAAAEEGFYIWNIKTGVIHYTDRCLTMMGASRKEKAPN CCCCCCCCCHHHEEEHHHHHHHHHHHCCCEEEEEEECCEEEHHHHHHHHHCCCCHHCCCC IFTQPELTIHEEDQAFFSQEVRRYLDGHSHVPMRIEIRMKKLNSKSWSWVRVNGLARRDK CCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCEEEECCHHHHHC QRRPVMLVGVWVNITRRKTAELRAAEDRDLFHTLIEHIPDSIYFKNRESRFVLANTATAN CCCCEEEEEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCC KLGVPTPADLTGRTDDYFFDQTMSDISRKEEMDIMVTGRPIRARLHHETWLHKDDSWSQI CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCHHHH SKFPWYGRNGELKGIVGISSDVTKLVKTEIKATETARILEERNRTLEKEIDLAREIQFAL HCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE LPYEIPSRSHTEHGLTRHADFHHIFTPSEGVAGDWFDAFPVGSSGVGAIVCDVMGHGIRA ECEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH ALIASMLRGLMEQLSHLADNPAAFLTSLNHQLAKILQRANTTMFASAVYIYLDLETGVMT HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCEEE ASTAGHPHPIIMGPDGVARKMPLPKGIALGLLDDATYHNAQFSLLAGSRILMYTDGLTEA ECCCCCCCCEEECCCCCHHCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEECCCHHH ANQDGEEMGVERLIDYFNNSSPHSTKDFVHQALTCVAKFTGCTNQADDICMLGISYSEHE HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHCC AETDG CCCCC >Mature Secondary Structure PPSRNRHSAQRVFTWDKIKMALAAAEEGFYIWNIKTGVIHYTDRCLTMMGASRKEKAPN CCCCCCCCHHHEEEHHHHHHHHHHHCCCEEEEEEECCEEEHHHHHHHHHCCCCHHCCCC IFTQPELTIHEEDQAFFSQEVRRYLDGHSHVPMRIEIRMKKLNSKSWSWVRVNGLARRDK CCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCEEEECCHHHHHC QRRPVMLVGVWVNITRRKTAELRAAEDRDLFHTLIEHIPDSIYFKNRESRFVLANTATAN CCCCEEEEEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCC KLGVPTPADLTGRTDDYFFDQTMSDISRKEEMDIMVTGRPIRARLHHETWLHKDDSWSQI CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCHHHH SKFPWYGRNGELKGIVGISSDVTKLVKTEIKATETARILEERNRTLEKEIDLAREIQFAL HCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE LPYEIPSRSHTEHGLTRHADFHHIFTPSEGVAGDWFDAFPVGSSGVGAIVCDVMGHGIRA ECEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH ALIASMLRGLMEQLSHLADNPAAFLTSLNHQLAKILQRANTTMFASAVYIYLDLETGVMT HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCEEE ASTAGHPHPIIMGPDGVARKMPLPKGIALGLLDDATYHNAQFSLLAGSRILMYTDGLTEA ECCCCCCCCEEECCCCCHHCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEECCCHHH ANQDGEEMGVERLIDYFNNSSPHSTKDFVHQALTCVAKFTGCTNQADDICMLGISYSEHE HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHCC AETDG CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]