Click here to switch to the map view.

The map label for this gene is 187736007

Identifier: 187736007

GI number: 187736007

Start: 1811834

End: 1812520

Strand: Reverse

Name: 187736007

Synonym: Amuc_1517

Alternate gene names: NA

Gene position: 1812520-1811834 (Counterclockwise)

Preceding gene: 187736028

Following gene: 187736006

Centisome position: 68.03

GC content: 51.53

Gene sequence:

>687_bases
ATGAATGTGCCCCCATTGCAACCCCATAACGAGTCCCAGCCTGACGAGCAGACACTTTCCCAATACGCGGAACATACCAG
GAAAAGCCTGATCGCGCGTTTGGAAAACTGGGAAGACCAGCGTACCTGGGATGAATTTTACCGGACATATTGGCGGCTTA
TTTATTCCGTCGCCCTCAAGGCCGGATTAAGGGAAGACGAGGCCTGGGACGTGGTACAGGAAACCATTCTTTCCATCGCC
AAGCAGAGCAGGAAAAATATTTACAAACCGGAACAGGGTTCCTTCAAACTCTGGCTATGGAACATGACCCGCTGGCGCAT
CAATGACCAGTTCCGCAAGCGGAAAAAGGACACGGCCATGCTGATGAACCCTGATGCCACGGATACCCTGGAACACCCCA
TCGACAAAATCCCGGATGAAGGGAAGAATAATTTTGACCAGGTATGGGAACGGGAATGGCAGAATAACCTTCTTCAGGCG
GCTCTGGAACGCGTCAAAGCAAAAGTGTCGCCCAAGCAGTTCCAGATTTTTGACTATTATGTCCTGCGGGAGTGGGACGC
GGCCAAGGTCCGCCGGCAGCTCGGCGTCACGATTGCCCAGGTCTATCTGGCAAAGCACCGCGTAGGAAGCGCTTTGAAGA
AAGAACTGCAATTTCTTCAATCCCAGGAAAAGGAAAAAGAAAAATAG

Upstream 100 bases:

>100_bases
TCCACGACGGACGTAGTGAATGAACAGGCTGGACCGTGCAGAATTTTCCGGCCTATTACTCGGCTTTCGCTTCACTTCCA
TCCGTAGTTCATGATAAACC

Downstream 100 bases:

>100_bases
GAGTCCATCTTAAAAACCAGCCGGTGTCCTTCATACGCGTTCCCCCGGCCAGGCCTCCTTTCAGAAAGGATTCCTTTATT
TTGCCTCTTGCCAAGACAGC

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor Y; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNVPPLQPHNESQPDEQTLSQYAEHTRKSLIARLENWEDQRTWDEFYRTYWRLIYSVALKAGLREDEAWDVVQETILSIA
KQSRKNIYKPEQGSFKLWLWNMTRWRINDQFRKRKKDTAMLMNPDATDTLEHPIDKIPDEGKNNFDQVWEREWQNNLLQA
ALERVKAKVSPKQFQIFDYYVLREWDAAKVRRQLGVTIAQVYLAKHRVGSALKKELQFLQSQEKEKEK

Sequences:

>Translated_228_residues
MNVPPLQPHNESQPDEQTLSQYAEHTRKSLIARLENWEDQRTWDEFYRTYWRLIYSVALKAGLREDEAWDVVQETILSIA
KQSRKNIYKPEQGSFKLWLWNMTRWRINDQFRKRKKDTAMLMNPDATDTLEHPIDKIPDEGKNNFDQVWEREWQNNLLQA
ALERVKAKVSPKQFQIFDYYVLREWDAAKVRRQLGVTIAQVYLAKHRVGSALKKELQFLQSQEKEKEK
>Mature_228_residues
MNVPPLQPHNESQPDEQTLSQYAEHTRKSLIARLENWEDQRTWDEFYRTYWRLIYSVALKAGLREDEAWDVVQETILSIA
KQSRKNIYKPEQGSFKLWLWNMTRWRINDQFRKRKKDTAMLMNPDATDTLEHPIDKIPDEGKNNFDQVWEREWQNNLLQA
ALERVKAKVSPKQFQIFDYYVLREWDAAKVRRQLGVTIAQVYLAKHRVGSALKKELQFLQSQEKEKEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27395; Mature: 27395

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVPPLQPHNESQPDEQTLSQYAEHTRKSLIARLENWEDQRTWDEFYRTYWRLIYSVALK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
AGLREDEAWDVVQETILSIAKQSRKNIYKPEQGSFKLWLWNMTRWRINDQFRKRKKDTAM
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCE
LMNPDATDTLEHPIDKIPDEGKNNFDQVWEREWQNNLLQAALERVKAKVSPKQFQIFDYY
EECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VLREWDAAKVRRQLGVTIAQVYLAKHRVGSALKKELQFLQSQEKEKEK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNVPPLQPHNESQPDEQTLSQYAEHTRKSLIARLENWEDQRTWDEFYRTYWRLIYSVALK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
AGLREDEAWDVVQETILSIAKQSRKNIYKPEQGSFKLWLWNMTRWRINDQFRKRKKDTAM
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCE
LMNPDATDTLEHPIDKIPDEGKNNFDQVWEREWQNNLLQAALERVKAKVSPKQFQIFDYY
EECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VLREWDAAKVRRQLGVTIAQVYLAKHRVGSALKKELQFLQSQEKEKEK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA