Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735961
Identifier: 187735961
GI number: 187735961
Start: 1761383
End: 1762330
Strand: Reverse
Name: 187735961
Synonym: Amuc_1470
Alternate gene names: NA
Gene position: 1762330-1761383 (Counterclockwise)
Preceding gene: 187735967
Following gene: 187735960
Centisome position: 66.15
GC content: 57.91
Gene sequence:
>948_bases ATGGATTCCCCCGTTCCTGATGGCAAAGAGAGATTTCTGACCGCCCCCATGATCGCCGCCCTGGCCGTGAGCACGCTGCT GCTGGCGCTGAACTATCTGGCATTCCCGGAATTCGGTTCATTCGGAAATGAAAACAGCATCCAGTGGCTCATTTCCTCCT GGAACAAGCAAACGGATTATGAACACGGCTGGCTGGTGGTTCCCATCATCATCTTCATGCTGTACCATGCCAGAAAGATA ATTGCCCAGGCACCCAGACGCATGGACTGGCGCGGCCTGATTCTTTTCATCCCGGCGATCATGCTTCTGATGCTTTCCTT CCGCGTGGGGCAGCCTCGCGTGGCCGTAGGCGCTCTTCCCCTGATTTTACTGGGCGGGGCCTGGTACCTGGCCGGACCGC AGACCGCCAGGCTGTGCGCCTTCCCGCTGCTCTTTTTCTGGCTGTGCATCCCCCTGCCCTCCTTCCAGCAGGCTACGGTG GGGCTTCAAATCATCGCGACGGAACTGGGGCATTGGGGGGCAAGCATCTTCGGGGTGGACACCTATCTGCAGGGCACCAA TATCCGCTCTACCGGCGGACACTGGGATGCCTTCAATATTGCAGGAGGGTGCAGCGGCATGCGTTCCCTGATGGCACTGC TCATGCTGTCCGCAGCCTGGGCCTACCTGTCCGACTTGAAATTCTGGAAAAAATGCGTGCTCTTCCTCAGCGCGATTCCC CTGGCCGTCATCGGCAACGGTGTCCGCATCACCAGCATCGTGGTGATGGCGGAATACGGAAATCCCGAGTTTGCGTCAAA AACCTGGCATGACTGGTCCGGCCTGCTGTTTTTTTTCCCTATCAGCCTTTTCGGCCTGGCAGCCGTCCACTCCCTGCTGG CCGGGGAACTCATCTGGAAGCCGTCACAGCGCAAGAAGCTGGTTGTTAAGATGAACAAGTCCCATTAA
Upstream 100 bases:
>100_bases GCTGATAATCTTCATACCGGAAACTGAAAAGCGGACGCATTCTGAACACAGGCCCGCATAATCGCAATACTTAATTCTCA CAATTTGATTTTTCTCCATG
Downstream 100 bases:
>100_bases GCGTTTCCGCCGCCATGAATATTAAAACGCTCAAAATTCTCATCATCCCTTTTCTGCTGTCCGTCATGCTCGGCGGCACT TACCTGATGCCACGCAGGGG
Product: eight transmembrane protein EpsH
Products: NA
Alternate protein names: EpsI Family Protein
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MDSPVPDGKERFLTAPMIAALAVSTLLLALNYLAFPEFGSFGNENSIQWLISSWNKQTDYEHGWLVVPIIIFMLYHARKI IAQAPRRMDWRGLILFIPAIMLLMLSFRVGQPRVAVGALPLILLGGAWYLAGPQTARLCAFPLLFFWLCIPLPSFQQATV GLQIIATELGHWGASIFGVDTYLQGTNIRSTGGHWDAFNIAGGCSGMRSLMALLMLSAAWAYLSDLKFWKKCVLFLSAIP LAVIGNGVRITSIVVMAEYGNPEFASKTWHDWSGLLFFFPISLFGLAAVHSLLAGELIWKPSQRKKLVVKMNKSH
Sequences:
>Translated_315_residues MDSPVPDGKERFLTAPMIAALAVSTLLLALNYLAFPEFGSFGNENSIQWLISSWNKQTDYEHGWLVVPIIIFMLYHARKI IAQAPRRMDWRGLILFIPAIMLLMLSFRVGQPRVAVGALPLILLGGAWYLAGPQTARLCAFPLLFFWLCIPLPSFQQATV GLQIIATELGHWGASIFGVDTYLQGTNIRSTGGHWDAFNIAGGCSGMRSLMALLMLSAAWAYLSDLKFWKKCVLFLSAIP LAVIGNGVRITSIVVMAEYGNPEFASKTWHDWSGLLFFFPISLFGLAAVHSLLAGELIWKPSQRKKLVVKMNKSH >Mature_315_residues MDSPVPDGKERFLTAPMIAALAVSTLLLALNYLAFPEFGSFGNENSIQWLISSWNKQTDYEHGWLVVPIIIFMLYHARKI IAQAPRRMDWRGLILFIPAIMLLMLSFRVGQPRVAVGALPLILLGGAWYLAGPQTARLCAFPLLFFWLCIPLPSFQQATV GLQIIATELGHWGASIFGVDTYLQGTNIRSTGGHWDAFNIAGGCSGMRSLMALLMLSAAWAYLSDLKFWKKCVLFLSAIP LAVIGNGVRITSIVVMAEYGNPEFASKTWHDWSGLLFFFPISLFGLAAVHSLLAGELIWKPSQRKKLVVKMNKSH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34945; Mature: 34945
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSPVPDGKERFLTAPMIAALAVSTLLLALNYLAFPEFGSFGNENSIQWLISSWNKQTDY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCC EHGWLVVPIIIFMLYHARKIIAQAPRRMDWRGLILFIPAIMLLMLSFRVGQPRVAVGALP CCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LILLGGAWYLAGPQTARLCAFPLLFFWLCIPLPSFQQATVGLQIIATELGHWGASIFGVD HHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHEEHH TYLQGTNIRSTGGHWDAFNIAGGCSGMRSLMALLMLSAAWAYLSDLKFWKKCVLFLSAIP HEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAVIGNGVRITSIVVMAEYGNPEFASKTWHDWSGLLFFFPISLFGLAAVHSLLAGELIWK HHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PSQRKKLVVKMNKSH CCCCCEEEEEECCCC >Mature Secondary Structure MDSPVPDGKERFLTAPMIAALAVSTLLLALNYLAFPEFGSFGNENSIQWLISSWNKQTDY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCC EHGWLVVPIIIFMLYHARKIIAQAPRRMDWRGLILFIPAIMLLMLSFRVGQPRVAVGALP CCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LILLGGAWYLAGPQTARLCAFPLLFFWLCIPLPSFQQATVGLQIIATELGHWGASIFGVD HHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHEEHH TYLQGTNIRSTGGHWDAFNIAGGCSGMRSLMALLMLSAAWAYLSDLKFWKKCVLFLSAIP HEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAVIGNGVRITSIVVMAEYGNPEFASKTWHDWSGLLFFFPISLFGLAAVHSLLAGELIWK HHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PSQRKKLVVKMNKSH CCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA