Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is rpsF
Identifier: 187735967
GI number: 187735967
Start: 1767340
End: 1767624
Strand: Reverse
Name: rpsF
Synonym: Amuc_1476
Alternate gene names: 187735967
Gene position: 1767624-1767340 (Counterclockwise)
Preceding gene: 187735968
Following gene: 187735961
Centisome position: 66.35
GC content: 56.14
Gene sequence:
>285_bases ATGAGAAATTACGAAGCTCTTATCGTATTCAACATGAAGGGTACGGAAACTCCCGTCGAGGAGTTGATCAGCACCGTAGC CGCCGCGATGAAGGAAGAAGGCGCCGACATCACCGCCACGGAAAACGCCGGCCGCCGCGAATTCGCCTACGAATCCAACC ACCTTTCCGCCGGGCAGTATGTGACCTACACGTTCTCTGCGGAACCTTCCGCCATCAGGCCCATCCGCGAACGCCTTCGC CTGAATCCCCAGATTCACCTTCAGTATTACAAGGTGCTCGGCTAA
Upstream 100 bases:
>100_bases AGGTAAAAAATAGGCTTGCTTTCTGAAGGCAATCATTGCACCTTACTTGCCCGCAAGGTGCGCACCGTTCGCACGACACA TTTCTAATTATCACAAGACC
Downstream 100 bases:
>100_bases AATCCGGCCCATGCGGACGAAATATCCGCTCCTTGCTTTCTTATCAAAAAGAACCGTCTCCGCGAAGGGGCGGTTCTTTT CTTATGGATTACCATCCCTT
Product: ribosomal protein S6
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 94; Mature: 94
Protein sequence:
>94_residues MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQYVTYTFSAEPSAIRPIRERLR LNPQIHLQYYKVLG
Sequences:
>Translated_94_residues MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQYVTYTFSAEPSAIRPIRERLR LNPQIHLQYYKVLG >Mature_94_residues MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQYVTYTFSAEPSAIRPIRERLR LNPQIHLQYYKVLG
Specific function: Binds together with S18 to 16S ribosomal RNA
COG id: COG0360
COG function: function code J; Ribosomal protein S6
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribosomal protein S6P family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RS6_AKKM8 (B2UL25)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001878079.1 - ProteinModelPortal: B2UL25 - SMR: B2UL25 - GeneID: 6275621 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_1476 - GO: GO:0005840 - GO: GO:0006412 - HAMAP: MF_00360 - InterPro: IPR000529 - InterPro: IPR020814 - InterPro: IPR014717 - Gene3D: G3DSA:3.30.70.60 - TIGRFAMs: TIGR00166
Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6
EC number: NA
Molecular weight: Translated: 10640; Mature: 10640
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS01048 RIBOSOMAL_S6
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQY CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCE VTYTFSAEPSAIRPIRERLRLNPQIHLQYYKVLG EEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECC >Mature Secondary Structure MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQY CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCE VTYTFSAEPSAIRPIRERLRLNPQIHLQYYKVLG EEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA